Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ST64987_RS07630 Genome accession   NZ_CP049053
Coordinates   1451806..1452840 (-) Length   344 a.a.
NCBI ID   WP_375709249.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST64987     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1446806..1457840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS07605 (ST64987_1446) ilvD 1447058..1448776 (-) 1719 WP_011226435.1 dihydroxy-acid dehydratase -
  ST64987_RS07610 (ST64987_1447) - 1448889..1450070 (+) 1182 WP_167401587.1 NAD(P)/FAD-dependent oxidoreductase -
  ST64987_RS07620 (ST64987_1448) trmB 1450306..1450947 (-) 642 WP_167401588.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ST64987_RS07625 (ST64987_1449) ccrZ 1450957..1451748 (-) 792 WP_002951667.1 cell cycle regulator CcrZ -
  ST64987_RS07630 (ST64987_1450) pptB 1451806..1452840 (-) 1035 WP_375709249.1 ABC transporter permease Regulator
  ST64987_RS07635 (ST64987_1451) pptA 1452840..1453571 (-) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  ST64987_RS07640 (ST64987_1452) - 1453636..1454055 (+) 420 WP_011227486.1 HIT family protein -
  ST64987_RS07645 (ST64987_1453) - 1454052..1454351 (+) 300 WP_101415677.1 hypothetical protein -
  ST64987_RS07650 (ST64987_1454) - 1454403..1455131 (-) 729 WP_023909893.1 hypothetical protein -
  ST64987_RS07655 (ST64987_1455) - 1455149..1455784 (-) 636 WP_023909894.1 DUF4230 domain-containing protein -
  ST64987_RS10500 - 1455803..1455928 (-) 126 WP_259699999.1 hypothetical protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40018.51 Da        Isoelectric Point: 10.5243

>NTDB_id=424491 ST64987_RS07630 WP_375709249.1 1451806..1452840(-) (pptB) [Streptococcus thermophilus strain ST64987]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGCAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLVAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSIKRRGYLDGILKRTKKDKKHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMTNLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=424491 ST64987_RS07630 WP_375709249.1 1451806..1452840(-) (pptB) [Streptococcus thermophilus strain ST64987]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTCTTACTGCCTTTTTGGGGCAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGTGTGCTTTTAGATT
TTGGGTGCTCATCCAGACCTTGATTTTTATCTTGGTCGTCCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTGTAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGG
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTCTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTATTAAACGCCGTGGTTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAACATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGACCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

98.256

100

0.983

  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927