Detailed information NTG0424395

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ATY02_RS10280
• Genome accession: NZ_CP049045
• Coordinates: 2181805..2184036 (+)
• Length: 743 a.a.
• NCBI ID: WP_068577999.1
• Uniprot ID: A0A6G6ZWI5
• Organism: Pseudomonas sp. BIOMIG1BAC
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2176805..2189036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY02_RS10255 (ATY02_10220)	-	2177931..2178590 (+)	660	WP_068578006.1	transglutaminase-like domain-containing protein	-
ATY02_RS10260 (ATY02_10225)	-	2178633..2179256 (+)	624	WP_068578027.1	glutathione S-transferase family protein	-
ATY02_RS10265 (ATY02_10230)	-	2179389..2180321 (+)	933	WP_068578004.1	ABC transporter ATP-binding protein	-
ATY02_RS10270 (ATY02_10235)	-	2180318..2181097 (+)	780	WP_068578002.1	ABC transporter permease	-
ATY02_RS10275 (ATY02_10240)	-	2181149..2181664 (-)	516	WP_068578001.1	DUF2062 domain-containing protein	-
ATY02_RS10280 (ATY02_10245)	comA	2181805..2184036 (+)	2232	WP_068577999.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ATY02_RS10285 (ATY02_10250)	exbB	2184139..2184774 (+)	636	WP_068577997.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ATY02_RS10290 (ATY02_10255)	-	2184771..2185199 (+)	429	WP_068577995.1	ExbD/TolR family protein	-
ATY02_RS10295 (ATY02_10260)	lpxK	2185199..2186209 (+)	1011	WP_068577993.1	tetraacyldisaccharide 4'-kinase	-
ATY02_RS10300 (ATY02_10265)	-	2186234..2186419 (+)	186	WP_056836870.1	Trm112 family protein	-
ATY02_RS10305 (ATY02_10270)	kdsB	2186416..2187180 (+)	765	WP_068577991.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ATY02_RS10310 (ATY02_10275)	-	2187180..2187644 (+)	465	WP_068577989.1	low molecular weight protein-tyrosine-phosphatase	-
ATY02_RS10315 (ATY02_10280)	murB	2187641..2188660 (+)	1020	WP_068577987.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 82015.09 Da
• Isoelectric Point: 10.7890

>NTDB_id=424395 ATY02_RS10280 WP_068577999.1 2181805..2184036(+) (comA) [Pseudomonas sp. BIOMIG1BAC]
MRTGMLGLAAGLLALGFLPALPPAWWLWPMGILALMMLPFRTHPVAFFLFGLAWACTCAQWALDDRLASRLDGQTRWLEG
RVVGLPESGTGVVRFEVQDAQARRDRLPRRMRLSWRDGPQVRSGERWRLAVTLRRPAGLLNLQGFDYEAWLLARRIGATG
TVKGGQLLAAARGAWRDGLRQRLLAVEAHGRAGGLAALVMGDGSGLAREDWQLLQDTGTVHLMVISGQHISLLAGVVYLA
VAGLARHGAWPERWPWLPWACALAFLAALGYGLLAGFDVPVQRSCVMVALVLLWRLRFRHLGTWWPLLLALDAVLLFEPL
ASLQPGFWLSFAAVAILVFTFAGRLGTWRWWQSWSRAQWLVAIGLLPSLLALGLPISLSGPVANLLAVPWISFLVLPPAL
LGCLLLPVPYLGEGMLWLAGGLLDGLFRWLEVVARWSPAWMAPLLPWWLWVLSCLGAGLLLLPAGTPLRIFGWPLLLLVA
WPPPQRVPYGQAEVWQLDVGQGLSFILRTREHAMLYDAGARSGDFDLGERVVVPTLHRLAIRQLDLMLLSHADNDHAGGA
LAVQRALPVRLVRSGESRELPVALQAAPCESGVSWQWDGVRFSQWQWAHARDGNQASCVLLVEANGERLLLTGDIDVQAE
RAFLDSPLGVPVHWLQAPHHGSRTSSSRALLQRLAPGAVLISRGRGNAYGHPHPQVVARYRRQGVIIYDSAEQGALKLQL
GAFSKPYSVREQRRFWRAPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=424395 ATY02_RS10280 WP_068577999.1 2181805..2184036(+) (comA) [Pseudomonas sp. BIOMIG1BAC]
ATGCGCACAGGGATGCTGGGGTTGGCCGCGGGGCTTCTGGCACTGGGTTTCCTGCCAGCCTTGCCGCCCGCCTGGTGGTT
GTGGCCGATGGGGATACTGGCATTGATGATGCTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGCCTGGCTT
GGGCGTGCACGTGCGCGCAATGGGCGCTTGATGACCGCCTGGCCTCGCGACTGGATGGGCAGACCCGTTGGCTGGAGGGG
AGGGTCGTCGGTTTGCCGGAGAGCGGAACAGGGGTAGTACGTTTCGAGGTGCAGGATGCCCAGGCCCGGCGTGATCGGTT
GCCAAGGCGAATGCGCCTGAGCTGGCGTGATGGGCCGCAGGTCAGAAGTGGCGAGCGCTGGCGCCTGGCGGTGACCTTGC
GGCGCCCGGCGGGCCTGCTCAATCTGCAGGGTTTCGACTACGAAGCCTGGTTGCTGGCCAGGCGGATTGGCGCCACCGGT
ACGGTCAAGGGCGGCCAGCTACTGGCTGCGGCCCGTGGTGCCTGGCGTGATGGCTTGCGCCAGCGGTTATTGGCCGTCGA
GGCCCATGGGCGTGCCGGAGGGCTGGCTGCTCTGGTGATGGGGGACGGTTCCGGGTTGGCGCGTGAGGATTGGCAGCTGC
TGCAGGACACTGGCACCGTGCACTTGATGGTGATCTCCGGGCAGCACATCAGCCTGTTGGCCGGGGTGGTTTACCTGGCC
GTGGCGGGATTGGCACGTCATGGCGCGTGGCCCGAGCGTTGGCCCTGGCTGCCCTGGGCTTGTGCCCTGGCATTCCTCGC
GGCCCTGGGTTATGGGCTGCTGGCCGGGTTCGACGTGCCCGTCCAGCGCTCTTGTGTGATGGTGGCGCTGGTCCTGCTCT
GGCGCTTGCGCTTTCGTCACCTGGGGACCTGGTGGCCGTTGTTGCTGGCGCTTGATGCGGTCTTGCTGTTCGAACCCCTG
GCCAGCCTGCAACCGGGGTTCTGGTTGTCGTTCGCCGCGGTGGCGATCCTGGTCTTCACCTTCGCCGGGCGCCTGGGGAC
ATGGCGCTGGTGGCAAAGCTGGAGCCGCGCCCAGTGGTTGGTGGCCATCGGCCTCTTGCCATCGCTACTGGCCCTGGGCC
TGCCCATCAGCCTCAGTGGTCCAGTGGCCAATCTGCTGGCCGTTCCCTGGATCAGTTTTCTAGTACTGCCGCCAGCCTTG
TTGGGGTGCCTGCTGTTGCCCGTGCCCTATCTGGGAGAGGGAATGCTGTGGCTGGCCGGTGGGTTGCTCGACGGGTTGTT
TCGTTGGCTGGAGGTGGTGGCCCGATGGTCCCCGGCTTGGATGGCACCCCTGCTTCCCTGGTGGCTCTGGGTCTTGTCCT
GCCTGGGTGCTGGCTTGTTGCTGTTGCCTGCTGGTACGCCGTTGCGGATTTTCGGCTGGCCCTTGTTGTTGCTGGTGGCC
TGGCCACCGCCGCAGCGGGTGCCCTATGGCCAGGCCGAGGTCTGGCAGCTGGATGTGGGGCAGGGATTGTCATTCATCCT
GCGTACCAGGGAGCACGCGATGCTGTATGACGCCGGCGCCCGCAGCGGTGATTTCGACCTGGGGGAGCGAGTGGTGGTGC
CGACCTTGCATCGGCTGGCCATCCGGCAACTGGACCTGATGCTGCTCAGCCATGCCGATAACGATCACGCCGGAGGTGCC
CTGGCGGTGCAGCGGGCGTTGCCGGTGCGCCTGGTACGCAGTGGCGAGTCCCGGGAGTTGCCGGTGGCCCTGCAAGCCGC
ACCTTGTGAGTCCGGAGTGAGCTGGCAATGGGATGGCGTGCGTTTCAGCCAATGGCAATGGGCCCACGCCCGTGATGGCA
ACCAGGCATCCTGCGTGCTGTTGGTCGAGGCGAATGGAGAGCGCCTGCTGCTCACCGGCGATATCGACGTCCAGGCCGAA
AGAGCCTTTCTAGACAGTCCGCTGGGGGTGCCTGTGCATTGGCTGCAAGCGCCTCACCACGGTAGCCGGACCTCGTCGTC
CAGGGCCTTGTTGCAGCGCCTGGCCCCTGGCGCGGTGCTGATCTCCCGGGGGCGTGGCAATGCCTATGGCCATCCCCACC
CGCAAGTGGTGGCGCGTTATCGACGCCAGGGCGTGATCATCTACGACAGCGCCGAGCAGGGGGCACTGAAGCTGCAACTA
GGGGCCTTCAGCAAGCCATACAGCGTGCGGGAGCAGCGGCGTTTCTGGCGTGCTCCACCGGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

3D structure

• AlphaFold DB: A0A6G6ZWI5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.535	96.635	0.604
comA	Ralstonia pseudosolanacearum GMI1000	32.968	100	0.365