Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ATY02_RS10285 Genome accession   NZ_CP049045
Coordinates   2184139..2184774 (+) Length   211 a.a.
NCBI ID   WP_068577997.1    Uniprot ID   A0A6G6ZX09
Organism   Pseudomonas sp. BIOMIG1BAC     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2179139..2189774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY02_RS10265 (ATY02_10230) - 2179389..2180321 (+) 933 WP_068578004.1 ABC transporter ATP-binding protein -
  ATY02_RS10270 (ATY02_10235) - 2180318..2181097 (+) 780 WP_068578002.1 ABC transporter permease -
  ATY02_RS10275 (ATY02_10240) - 2181149..2181664 (-) 516 WP_068578001.1 DUF2062 domain-containing protein -
  ATY02_RS10280 (ATY02_10245) comA 2181805..2184036 (+) 2232 WP_068577999.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ATY02_RS10285 (ATY02_10250) exbB 2184139..2184774 (+) 636 WP_068577997.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ATY02_RS10290 (ATY02_10255) - 2184771..2185199 (+) 429 WP_068577995.1 ExbD/TolR family protein -
  ATY02_RS10295 (ATY02_10260) lpxK 2185199..2186209 (+) 1011 WP_068577993.1 tetraacyldisaccharide 4'-kinase -
  ATY02_RS10300 (ATY02_10265) - 2186234..2186419 (+) 186 WP_056836870.1 Trm112 family protein -
  ATY02_RS10305 (ATY02_10270) kdsB 2186416..2187180 (+) 765 WP_068577991.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ATY02_RS10310 (ATY02_10275) - 2187180..2187644 (+) 465 WP_068577989.1 low molecular weight protein-tyrosine-phosphatase -
  ATY02_RS10315 (ATY02_10280) murB 2187641..2188660 (+) 1020 WP_068577987.1 UDP-N-acetylmuramate dehydrogenase -
  ATY02_RS10320 (ATY02_10285) - 2188910..2189380 (+) 471 WP_068577985.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23063.20 Da        Isoelectric Point: 6.9829

>NTDB_id=424396 ATY02_RS10285 WP_068577997.1 2184139..2184774(+) (exbB) [Pseudomonas sp. BIOMIG1BAC]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=424396 ATY02_RS10285 WP_068577997.1 2184139..2184774(+) (exbB) [Pseudomonas sp. BIOMIG1BAC]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCTGCCGTGGGCATCATTGC
TGAGCGCTTGTGGACCCTGCGAGCCAGCCGTGTCACACCGCCCCATCTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGTTGCGCGCCGACTCGCCACTGGGTGAGATCCTGGCCGCAGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCGGCTGCCCGGGTCATCCACGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCTTTGCTGGGCCTGCTGGGTACGGTACTGGGGATGATCGATATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCCATGTACTGGCGGGGGGGATTTCCAAGGCGCTGATCACTACGGCG
GCCGGCCTGATGGTGGGTATTCCGTCGGTGTTCTTCCATCGCTTCCTGCAACGCCGGGTCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGATCCAGGGCGACCGCGATGTCGACCTGGCCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6ZX09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872