Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IG172_RS01865 Genome accession   NZ_CP062204
Coordinates   414550..415182 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain C311     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 409550..420182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG172_RS01840 (IG172_01840) yhfG 409682..409849 (+) 168 WP_000736860.1 YhfG family protein -
  IG172_RS01845 (IG172_01845) fic 409839..410441 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  IG172_RS01850 (IG172_01850) pabA 410473..411036 (+) 564 WP_000601844.1 aminodeoxychorismate synthase component 2 -
  IG172_RS01855 (IG172_01855) argD 411122..412342 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  IG172_RS01860 (IG172_01860) yhfK 412409..414499 (-) 2091 WP_001345983.1 YccS/YhfK family putative transporter -
  IG172_RS01865 (IG172_01865) crp 414550..415182 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  IG172_RS01870 (IG172_01870) yhfA 415484..415888 (+) 405 WP_001148908.1 OsmC family protein -
  IG172_RS01875 (IG172_01875) prkB 415943..416812 (-) 870 WP_001274680.1 phosphoribulokinase -
  IG172_RS01880 (IG172_01880) yheU 416866..417084 (-) 219 WP_000907085.1 YheU family protein -
  IG172_RS01885 (IG172_01885) yheT 417078..418100 (-) 1023 WP_000057405.1 hydrolase -
  IG172_RS01890 (IG172_01890) yheS 418100..420013 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=423992 IG172_RS01865 WP_000242755.1 414550..415182(-) (crp) [Escherichia coli strain C311]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=423992 IG172_RS01865 WP_000242755.1 414550..415182(-) (crp) [Escherichia coli strain C311]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467