Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Machinery gene
Locus tag   G4V50_RS08710 Genome accession   NZ_CP048899
Coordinates   1684711..1685943 (+) Length   410 a.a.
NCBI ID   WP_003689811.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1679711..1690943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V50_RS08695 fabI 1680587..1681372 (-) 786 WP_002223367.1 enoyl-ACP reductase FabI -
  G4V50_RS08700 dapD 1681527..1682348 (-) 822 WP_003689804.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  G4V50_RS08705 pgi 1682558..1684201 (-) 1644 WP_003689806.1 glucose-6-phosphate isomerase -
  G4V50_RS08710 pilG 1684711..1685943 (+) 1233 WP_003689811.1 type 4 pilus assembly protein PilG Machinery gene
  G4V50_RS08715 pilD 1686017..1686877 (+) 861 WP_003689814.1 prepilin peptidase Machinery gene
  G4V50_RS08720 coaE 1686874..1687506 (+) 633 WP_003689816.1 dephospho-CoA kinase -
  G4V50_RS08725 - 1687499..1687708 (+) 210 WP_003696096.1 DNA gyrase inhibitor YacG -
  G4V50_RS08730 pilF 1687794..1689470 (-) 1677 WP_003689817.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G4V50_RS08740 - 1689808..1690254 (-) 447 WP_003689818.1 DUF441 domain-containing protein -

Sequence


Protein


Download         Length: 410 a.a.        Molecular weight: 45332.36 Da        Isoelectric Point: 10.0085

>NTDB_id=423917 G4V50_RS08710 WP_003689811.1 1684711..1685943(+) (pilG) [Neisseria gonorrhoeae strain SRRSH214]
MAKNGGFSLFAKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLS
TMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGQVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPPLTQTVMDMSDFFVSYGWMVLIALGFAI
YGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTIARWGRTTATLFAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRV
IQGLSMTSGMRATELFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYL
PLFNLGNVVA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=423917 G4V50_RS08710 WP_003689811.1 1684711..1685943(+) (pilG) [Neisseria gonorrhoeae strain SRRSH214]
ATGGCTAAAAATGGGGGATTTTCTTTGTTCGCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCTGCCTCCGA
CAAACTGGTCAACGGCGAAGTATCCGCGTTTACCGAAGAAGAGGCACGCAAAAAACTGGCAAAACGCGGCATCCGCCCGT
TGCAGATTACCCGTGTGAAAACAAGCTCCAAGCGCAAAATCACACAAGAAGACATTACCGTTTTCACCCGCCAGCTTTCC
ACGATGATTAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAAATCGTGGCGCGCGGACACGGCAACCCGTCTATGACGGA
AATGCTGATGGAAATCCGAGGCCAAGTGGAACAGGGCAGCTCGTTGAGCCGCGCATTCTCAAACCACCCGAAATATTTCG
ACCGCTTCTACTGCAACCTGGTTGCGGCGGGCGAAACGGGCGGTGTATTGGAAAGCCTGCTGGACAAATTGGCAATTTAC
AAGGAAAAAACCCAGGCCATCCGCAAAAAGGTAAAAACCGCGCTAACCTATCCGGTATCCGTCATCGCCGTCGCCATCGG
TTTGGTATTCGTGATGATGATTTTCGTACTGCCCGCCTTTAAAGAAGTTTACGCCAATATGGGCGCGGAGCTTCCCCCAC
TGACCCAAACAGTGATGGATATGTCCGACTTTTTCGTCTCATACGGCTGGATGGTGCTGATCGCACTGGGCTTTGCCATA
TACGGCTTCCTTAAATTGAAGGCGCGTTCGATTAAAATCCAACGGCGTATGGATGCCATACTGCTGCGTATGCCGATTTT
CGGAGACATTGTCCGCAAAGGGACGATTGCCCGCTGGGGCAGGACGACGGCAACGCTGTTTGCCGCCGGCGTGCCTTTGG
TCGATGTATTGGACTCCACTGCCGGCGCGGCGGGCAATTTAATCTATGAAGAAGCCACCCGGGAAATCCGTACGCGCGTC
ATCCAAGGTCTGTCTATGACTTCGGGGATGCGTGCGACGGAACTGTTCCCCAATATGATGTTGCAGATGTCCTCCATCGG
CGAGGAATCGGGTTCTTTGGACGATATGCTCAACAAAGCCGCCGAATTTTACGAAGACGAGGTGGACAATGCGGTCGGCA
GGCTGTCCGCTATGATGGAGCCGATTATTATTGTGATTTTGGGCTTGGTCATCGGTACGCTTCTGGTCGCTATGTATCTG
CCGCTGTTCAACTTGGGCAACGTGGTCGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

100

100

1

  pilG Neisseria meningitidis 44/76-A

98.78

100

0.988

  pilC Acinetobacter baumannii D1279779

47.236

97.073

0.459

  pilC Acinetobacter baylyi ADP1

45.363

97.317

0.441

  pilC Pseudomonas stutzeri DSM 10701

44.665

98.293

0.439

  pilC Legionella pneumophila strain ERS1305867

44.836

96.829

0.434

  pilC Vibrio cholerae strain A1552

41.294

98.049

0.405

  pilC Vibrio campbellii strain DS40M4

39.163

99.024

0.388