Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   G4P54_RS18285 Genome accession   NZ_CP048852
Coordinates   3465903..3466592 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus tequilensis strain EA-CB0015     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3460903..3471592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS18250 (G4P54_18200) flgN 3461084..3461566 (-) 483 WP_167873444.1 flagellar protein FlgN -
  G4P54_RS18255 (G4P54_18205) flgM 3461582..3461848 (-) 267 WP_024714212.1 flagellar biosynthesis anti-sigma factor FlgM -
  G4P54_RS18260 (G4P54_18210) - 3461928..3462347 (-) 420 WP_024714213.1 TIGR03826 family flagellar region protein -
  G4P54_RS18265 (G4P54_18215) comFC 3462421..3463143 (-) 723 WP_167873445.1 phosphoribosyltransferase family protein Machinery gene
  G4P54_RS18270 (G4P54_18220) - 3463107..3463403 (-) 297 WP_167873446.1 late competence development ComFB family protein -
  G4P54_RS18275 (G4P54_18225) comFA 3463472..3464848 (-) 1377 WP_167873447.1 ATP-dependent helicase ComFA Machinery gene
  G4P54_RS18280 (G4P54_18230) - 3464960..3465805 (-) 846 WP_167873448.1 DegV family protein -
  G4P54_RS18285 (G4P54_18235) degU 3465903..3466592 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  G4P54_RS18290 (G4P54_18240) degS 3466675..3467832 (-) 1158 WP_167873449.1 two-component sensor histidine kinase DegS Regulator
  G4P54_RS18295 (G4P54_18245) - 3468049..3468702 (+) 654 WP_167873450.1 YigZ family protein -
  G4P54_RS18300 (G4P54_18250) - 3468702..3469880 (+) 1179 WP_167873451.1 LCP family protein -
  G4P54_RS18305 (G4P54_18255) - 3469953..3471029 (-) 1077 WP_167873452.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=423594 G4P54_RS18285 WP_003219701.1 3465903..3466592(-) (degU) [Bacillus tequilensis strain EA-CB0015]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=423594 G4P54_RS18285 WP_003219701.1 3465903..3466592(-) (degU) [Bacillus tequilensis strain EA-CB0015]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGACGAAGCGGCTCGTATTGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTAAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACCCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTATACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
CGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTGAGTAATATCTTGCAAAAAATGAATGTGAACGACCGGA
CGCAAGCCGTTGTGGTCGCTATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1