Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IE382_RS17335 Genome accession   NZ_CP061870
Coordinates   3167434..3168129 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain FX-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3162434..3173129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS17310 (IE382_17220) minD 3163370..3164176 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  IE382_RS17315 (IE382_17225) minC 3164178..3164858 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  IE382_RS17320 (IE382_17230) mreD 3164911..3165429 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  IE382_RS17325 (IE382_17235) mreC 3165426..3166298 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  IE382_RS17330 (IE382_17240) mreB 3166329..3167342 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IE382_RS17335 (IE382_17245) ysxA/radC 3167434..3168129 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  IE382_RS17340 (IE382_17250) maf 3168166..3168735 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IE382_RS17345 (IE382_17255) spoIIB 3168888..3169886 (-) 999 WP_041336238.1 stage II sporulation protein SpoIIB -
  IE382_RS17350 (IE382_17260) comC 3170020..3170766 (-) 747 WP_026113741.1 A24 family peptidase Machinery gene
  IE382_RS17355 (IE382_17265) folC 3170906..3172198 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=423536 IE382_RS17335 WP_003246034.1 3167434..3168129(-) (ysxA/radC) [Bacillus subtilis strain FX-1]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=423536 IE382_RS17335 WP_003246034.1 3167434..3168129(-) (ysxA/radC) [Bacillus subtilis strain FX-1]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTGGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424