Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G4G71_RS27770 Genome accession   NZ_CP048833
Coordinates   6092966..6094303 (+) Length   445 a.a.
NCBI ID   WP_169941873.1    Uniprot ID   A0A7Z3GTR3
Organism   Pseudomonas multiresinivorans strain populi     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6087966..6099303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS27745 (G4G71_27705) pgeF 6088130..6088855 (-) 726 WP_169941865.1 peptidoglycan editing factor PgeF -
  G4G71_RS27750 (G4G71_27710) rluD 6088852..6089811 (-) 960 WP_169941867.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  G4G71_RS27755 (G4G71_27715) - 6089959..6090984 (+) 1026 WP_169941869.1 outer membrane protein assembly factor BamD -
  G4G71_RS27760 (G4G71_27720) - 6091129..6091371 (+) 243 WP_169942839.1 PP0621 family protein -
  G4G71_RS27765 (G4G71_27725) pilS 6091361..6092950 (+) 1590 WP_169941871.1 sensor histidine kinase Regulator
  G4G71_RS27770 (G4G71_27730) pilR 6092966..6094303 (+) 1338 WP_169941873.1 sigma-54-dependent transcriptional regulator Regulator
  G4G71_RS27775 (G4G71_27735) thiO 6094317..6095426 (-) 1110 WP_169941875.1 glycine oxidase ThiO -
  G4G71_RS27780 (G4G71_27740) - 6095621..6096133 (+) 513 WP_169941877.1 GspH/FimT family pseudopilin -
  G4G71_RS27785 (G4G71_27745) - 6096285..6096767 (+) 483 WP_169941880.1 GspH/FimT family pseudopilin -
  G4G71_RS27790 (G4G71_27750) pilV 6096764..6097348 (+) 585 WP_240964849.1 type IV pilus modification protein PilV -
  G4G71_RS27795 (G4G71_27755) - 6097358..6098107 (+) 750 WP_169941882.1 PilW family protein -
  G4G71_RS27800 (G4G71_27760) - 6098104..6098676 (+) 573 WP_169941884.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49687.98 Da        Isoelectric Point: 5.4538

>NTDB_id=423416 G4G71_RS27770 WP_169941873.1 6092966..6094303(+) (pilR) [Pseudomonas multiresinivorans strain populi]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQMPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLARLRELVNSALRLRSPEAEEAPVDSRLLGDSPPMRTLRNQVAKLARSQAPVY
ISGESGSGKELVARLIHEQGPREVQTFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKLGLFQAANGGTLFLDEVADLP
LPMQVKLLRVIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTDRV
LKRLAGDSGLTAASVSADALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPHDLRLAETSSPDGGGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=423416 G4G71_RS27770 WP_169941873.1 6092966..6094303(+) (pilR) [Pseudomonas multiresinivorans strain populi]
ATGAGCCGTCAAAAAGCCCTGATCGTCGACGACGAACCCGACATTCGCGAGCTGCTGGAAATCACCCTCGGTCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAATTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGATGGCACTGGCCTGGACCTGGTGCAATACATCCAGCAGCGCCATCCGCAGATGCCGGTGGCGATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTACAGGCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCGGTGGA
CCTCGCCCGTCTGCGCGAGCTGGTGAACTCCGCCCTGCGCCTGCGCTCGCCGGAAGCCGAGGAAGCGCCGGTGGACAGCC
GTCTGCTTGGCGACTCGCCGCCCATGCGCACCCTGCGCAACCAGGTGGCCAAGCTGGCCCGCAGCCAGGCGCCGGTTTAT
ATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTAGCCCGGCTGATCCACGAGCAGGGCCCGCGGGAGGTGCAGACCTT
CGTGCCGGTCAACTGCGGCGCCATCCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCTGGGCCTGTTCCAGGCAGCGAACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGACCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGCGTCATCCAGGAAAAGGCCGTGCGTGCCGTGGGTGGTCAGCAGGAAGTCGCGGT
GGACGTGCGCATCCTCTGCGCGACCCACAAGGACCTGGCCGCCGAAGTGGCTGCCGGGCGTTTCCGCCAGGACCTCTACT
ATCGCCTGAACGTCATCGAGCTGCGGGTTCCGCCCCTGCGCGAGCGTCGTGAAGACATCCCGCTGCTGACCGATCGCGTA
CTCAAGCGCCTGGCCGGCGACAGCGGGCTGACGGCCGCCTCGGTCAGCGCCGACGCGCTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGTAACGTGCGGGAGCTGGAGAACATGCTCGAGCGTGCCTACACGCTGTGCGAGGACGACGTCATCCAGCCCC
ACGACCTGCGTCTGGCCGAGACCAGTTCCCCGGACGGCGGTGGCGAAGCCAGCCTCGCGCAGATCGACAACCTCGAGGAC
TACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCGGCGGCGCAGCG
CCTGGGCCTGACCTTCCGCTCCATGCGCTACCGCCTGAAGAAACTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z3GTR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.989

100

0.89
  pilR Acinetobacter baumannii strain A118

48.366

100

0.499