Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   G4G71_RS27765 Genome accession   NZ_CP048833
Coordinates   6091361..6092950 (+) Length   529 a.a.
NCBI ID   WP_169941871.1    Uniprot ID   -
Organism   Pseudomonas multiresinivorans strain populi     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6086361..6097950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS27745 (G4G71_27705) pgeF 6088130..6088855 (-) 726 WP_169941865.1 peptidoglycan editing factor PgeF -
  G4G71_RS27750 (G4G71_27710) rluD 6088852..6089811 (-) 960 WP_169941867.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  G4G71_RS27755 (G4G71_27715) - 6089959..6090984 (+) 1026 WP_169941869.1 outer membrane protein assembly factor BamD -
  G4G71_RS27760 (G4G71_27720) - 6091129..6091371 (+) 243 WP_169942839.1 PP0621 family protein -
  G4G71_RS27765 (G4G71_27725) pilS 6091361..6092950 (+) 1590 WP_169941871.1 sensor histidine kinase Regulator
  G4G71_RS27770 (G4G71_27730) pilR 6092966..6094303 (+) 1338 WP_169941873.1 sigma-54-dependent transcriptional regulator Regulator
  G4G71_RS27775 (G4G71_27735) thiO 6094317..6095426 (-) 1110 WP_169941875.1 glycine oxidase ThiO -
  G4G71_RS27780 (G4G71_27740) - 6095621..6096133 (+) 513 WP_169941877.1 GspH/FimT family pseudopilin -
  G4G71_RS27785 (G4G71_27745) - 6096285..6096767 (+) 483 WP_169941880.1 GspH/FimT family pseudopilin -
  G4G71_RS27790 (G4G71_27750) pilV 6096764..6097348 (+) 585 WP_240964849.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58699.95 Da        Isoelectric Point: 7.9417

>NTDB_id=423415 G4G71_RS27765 WP_169941871.1 6091361..6092950(+) (pilS) [Pseudomonas multiresinivorans strain populi]
MVAEGISLTGQGLRVLRLYHLYRLTIGLVLVLLISSSLDDELLKLAHPELFHVGCWVYLILNILIAVLMPTPRQLLPLFI
LAALDILLLSALFYTAGGIPSGIGNLMVVAVAIANILLRGRIGLLIAAIAAINLIYLTFYLSLSQATALNHYVQAGGLGA
LSFASALLIQALARRQQVVENIAEQRATTVANLEELNALILQRMRTGILVLGDRHRVLLANQSATTLLGGHDLPGHSLAE
YSPQLVSSLQQWQQNPALRPPSLQPTESGLTVQPSFIPLRRGNEQHILMFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDKPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRYAGEMREGLREGQ
QIHVETGQGTVQTRMDPHQLTQVLTNLVQNGLRYSTQKNGTGQVWLRLYRDSETDLPVLEVLDDGPGISAEQRGKLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=423415 G4G71_RS27765 WP_169941871.1 6091361..6092950(+) (pilS) [Pseudomonas multiresinivorans strain populi]
GTGGTCGCTGAAGGGATATCCCTCACGGGCCAGGGCCTGCGGGTCCTGCGCCTGTACCACCTGTATCGCCTGACCATCGG
CCTGGTACTGGTACTGCTGATCTCCAGCAGCCTGGATGACGAACTGCTCAAGCTGGCCCACCCCGAGCTTTTCCATGTCG
GCTGCTGGGTCTACCTGATCCTCAACATCCTGATCGCCGTGCTGATGCCGACACCGCGCCAGTTGCTGCCGCTGTTCATC
CTGGCAGCGCTGGACATACTCTTGCTCAGCGCGCTGTTCTATACCGCCGGCGGCATTCCCAGCGGCATCGGCAACCTGAT
GGTGGTCGCCGTGGCGATCGCCAACATCCTGCTGCGCGGACGCATCGGCCTACTGATCGCCGCCATCGCCGCCATCAACC
TGATCTACCTGACTTTCTACCTGAGCCTCAGCCAGGCCACCGCCCTCAACCACTACGTGCAGGCCGGCGGCCTGGGCGCC
CTGAGCTTCGCCTCGGCCCTGCTGATCCAGGCCCTGGCCCGGCGCCAGCAGGTCGTCGAGAACATCGCCGAGCAACGCGC
CACCACAGTAGCCAACCTCGAAGAGCTCAACGCGCTGATCCTGCAGCGCATGCGTACCGGCATCCTGGTGCTGGGCGATC
GTCACCGCGTGCTGCTGGCCAACCAGAGCGCCACTACGCTGCTGGGCGGCCACGACCTGCCCGGCCACTCGCTGGCCGAG
TACAGCCCGCAGTTGGTCTCCAGCCTGCAGCAATGGCAGCAGAACCCCGCCCTGCGCCCGCCAAGCCTGCAGCCCACGGA
GTCCGGGCTGACCGTACAGCCCAGCTTCATCCCCCTGCGCCGGGGTAATGAACAGCACATCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCACAGCAGCTCAAGCTCGCGGCGCTTGGCCGGCTGACCGCCGGCATCGCCCATGAAATC
CGCAACCCGCTGGGCGCGATCAGCCACGCGGCGCAGCTGCTGCTGGAGTCGGAAGAACTGGACAAGCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTCATCGAGAACGTTCTGCAGCTGTCACGCCGACGCCAGT
CCGAACCGCAGTTGCTCGACCTGAAATACTGGCTGCACCGCTACGCCGGCGAGATGCGCGAAGGCCTGCGCGAGGGACAG
CAGATTCACGTGGAGACCGGCCAGGGCACCGTGCAGACACGCATGGACCCGCACCAGTTGACGCAGGTACTGACCAACCT
CGTGCAGAATGGGTTACGGTACAGCACCCAGAAGAACGGCACCGGCCAGGTCTGGCTGCGCCTGTACCGCGACAGCGAGA
CCGACCTGCCCGTGCTGGAAGTGCTCGACGACGGTCCCGGCATCAGCGCCGAACAGCGGGGGAAACTGTTCGAGCCGTTC
TTCACCACCGAAAGCAAGGGCACAGGCCTTGGCCTGTATATCTCCCGCGAGCTGTGCGAAAGCAACCAGGCTCGACTGGA
CTACAAGACGCGTGACGAAGGCGGCAGCTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

71.132

100

0.713

Multiple sequence alignment