Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   G3257_RS25875 Genome accession   NZ_CP048832
Coordinates   5794718..5795788 (-) Length   356 a.a.
NCBI ID   WP_176376502.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5789718..5800788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3257_RS25865 (G3257_25820) - 5790774..5793737 (-) 2964 WP_034780262.1 ribonucleoside-diphosphate reductase subunit alpha -
  G3257_RS25870 (G3257_25825) ampD 5794129..5794740 (-) 612 WP_176376501.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  G3257_RS25875 (G3257_25830) pilR 5794718..5795788 (-) 1071 WP_176376502.1 sigma-54 dependent transcriptional regulator Regulator
  G3257_RS25880 (G3257_25835) - 5795900..5796160 (-) 261 WP_034780264.1 PP0621 family protein -
  G3257_RS25885 (G3257_25840) ccsA 5796157..5796960 (-) 804 WP_034780265.1 cytochrome c biogenesis protein CcsA -
  G3257_RS25890 (G3257_25845) - 5797190..5798134 (-) 945 WP_176376931.1 ABC transporter substrate-binding protein -
  G3257_RS25895 (G3257_25850) - 5798332..5800326 (-) 1995 WP_099389041.1 MacB family efflux pump subunit -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38428.81 Da        Isoelectric Point: 9.7036

>NTDB_id=423383 G3257_RS25875 WP_176376502.1 5794718..5795788(-) (pilR) [Janthinobacterium lividum strain EIF1]
MSRPSPQTVTVTAAGMPPAPQLSGNSLPMQALRAQIGRIARCGAPVAIRGESGTGKELAARAIHAQGARASFPFIAVNCG
AIPEALMEAEFFGCRPGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSTDEAVDVRILC
ASQHGLGRGVAAGTFRQDLFYRLNVIELALPPLRERRGDLQVLCEVILARLSPRRAVSLAPPVLAALAAYAFPGNVRELE
NVLERALAFADGGVIALEGLALPPAAGSMPSRAPPALPERQLCLPGMAAYGVTPVLPLDMYLRQAERDMIMLALVQARYH
RARAARQLGLSVRQLRYRMQKLTIQEALFDERMDDR

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=423383 G3257_RS25875 WP_176376502.1 5794718..5795788(-) (pilR) [Janthinobacterium lividum strain EIF1]
ATGTCCCGTCCCAGTCCGCAGACCGTCACCGTCACCGCCGCCGGCATGCCGCCGGCGCCGCAACTGAGCGGCAACTCGCT
GCCCATGCAGGCGCTGCGCGCGCAGATCGGCCGCATCGCCCGCTGTGGCGCGCCGGTGGCCATCCGCGGCGAATCGGGCA
CGGGCAAGGAACTGGCGGCGCGCGCCATCCATGCGCAGGGCGCGCGCGCCAGCTTCCCGTTTATCGCCGTCAACTGTGGC
GCCATTCCCGAAGCGCTGATGGAAGCGGAATTCTTCGGCTGCCGCCCGGGCGCCTATACGGGCGCGCTGCACGAACGCCA
GGGCTTGTTCCAGGCCGCCCACGGTGGCAGCCTGCTGCTCGACGAAGTCGACGACCTGCCGCTGGCCATGCAGGTGAAAC
TGTTGCGCGTGCTGCAGGAGCGCCGCGTGCGCAAGCTGGGCGGCAGTACTGACGAGGCCGTCGACGTGCGCATCCTGTGC
GCCAGCCAGCATGGCCTGGGGCGCGGCGTGGCGGCCGGGACGTTTCGCCAGGACCTGTTCTACCGCCTGAATGTGATCGA
GCTGGCACTGCCGCCGTTGCGCGAACGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTCGCGCGCCTGTCGCCGC
GCCGGGCCGTGAGCCTGGCGCCGCCCGTGCTGGCGGCCCTGGCCGCGTATGCGTTTCCCGGCAATGTGCGCGAACTGGAA
AACGTGCTGGAGCGGGCGCTGGCCTTTGCCGACGGCGGCGTGATCGCGCTCGAGGGGCTGGCCTTGCCGCCGGCGGCGGG
CAGCATGCCGTCGCGGGCGCCGCCGGCCTTGCCGGAGCGGCAACTGTGCCTGCCCGGCATGGCGGCGTATGGCGTGACCC
CCGTCTTGCCGCTGGACATGTATTTGCGCCAGGCCGAGCGCGACATGATCATGCTGGCGCTGGTGCAGGCGCGCTACCAC
CGCGCGCGGGCGGCGCGCCAATTGGGCCTGAGCGTGCGCCAGTTGCGTTACCGCATGCAGAAATTGACGATACAGGAAGC
CCTATTTGATGAGCGCATGGACGATAGATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(302-342)

Sigma-54 interaction domain (Sigma54_activat)

(23-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.662

92.978

0.48
  pilR Acinetobacter baumannii strain A118

42.331

91.573

0.388
  luxO Vibrio cholerae strain A1552

39.938

90.73

0.362

Multiple sequence alignment