Detailed information NTG0423174

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GN234_RS26860
• Genome accession: NZ_CP048810
• Coordinates: 6047470..6049716 (+)
• Length: 748 a.a.
• NCBI ID: WP_176689315.1
• Uniprot ID: A0A6N1CLG7
• Organism: Pseudomonas bijieensis strain L22-9
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6042470..6054716

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GN234_RS26835 (GN234_26745)	-	6043486..6044146 (+)	661	Protein_5331	transglutaminase-like domain-containing protein	-
GN234_RS26840 (GN234_26750)	-	6044191..6044814 (+)	624	WP_176689313.1	glutathione S-transferase family protein	-
GN234_RS26845 (GN234_26755)	-	6044951..6045883 (+)	933	WP_176689314.1	ABC transporter ATP-binding protein	-
GN234_RS26850 (GN234_26760)	-	6045886..6046665 (+)	780	WP_072347169.1	ABC transporter permease	-
GN234_RS26855 (GN234_26765)	-	6046810..6047325 (-)	516	WP_046063671.1	DUF2062 domain-containing protein	-
GN234_RS26860 (GN234_26770)	comA	6047470..6049716 (+)	2247	WP_176689315.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GN234_RS26865 (GN234_26775)	exbB	6049812..6050447 (+)	636	WP_162893858.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GN234_RS26870 (GN234_26780)	-	6050444..6050872 (+)	429	WP_013694002.1	ExbD/TolR family protein	-
GN234_RS26875 (GN234_26785)	lpxK	6050872..6051882 (+)	1011	WP_109754399.1	tetraacyldisaccharide 4'-kinase	-
GN234_RS26880 (GN234_26790)	-	6051905..6052090 (+)	186	WP_003179363.1	Trm112 family protein	-
GN234_RS26885 (GN234_26795)	kdsB	6052087..6052851 (+)	765	WP_109754398.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GN234_RS26890 (GN234_26800)	-	6052851..6053315 (+)	465	WP_176689316.1	low molecular weight protein-tyrosine-phosphatase	-
GN234_RS26895 (GN234_26805)	murB	6053312..6054331 (+)	1020	WP_109754396.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81003.01 Da
• Isoelectric Point: 9.8097

>NTDB_id=423174 GN234_RS26860 WP_176689315.1 6047470..6049716(+) (comA) [Pseudomonas bijieensis strain L22-9]
MRTGLVALALGLLAPIFLPALPPLWLIAAMPVVALMALPFRTYPLGFFLFGLAWACLSAQFALDDRLSVALDGETRWVEG
RVVGLPQQGDGVVRFELADAHSRRTRLPTTLRLAWFGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYSAWLLSRGIGATG
TVKDGRLLQAARGAWRDEVRQALAQVDANGRSGALAALVLGDGGGLTREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPAGLAWLPWACALAFCAALGYGLLAGFEVPVRRACTMIGLVLLWRLRFKQPDPWWTWLLAFAGVLVFDPL
ANLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTALLPVPLIGEGLLWIAGGLLDLLFKGLTLVAGRMPAWVPAAVSTWALGIAALGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPPGQAEIWQLDVGQGLAVLVRTRRHTLLYDAGPRFGEADVGERVVLPTLRKLGVRGLDLMLLSHADADHAGGA
PAVRNGLPTREVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDIHAE
RALLDEALALPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLQL
GAFELPRTEAGHRRYWRDRPTVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=423174 GN234_RS26860 WP_176689315.1 6047470..6049716(+) (comA) [Pseudomonas bijieensis strain L22-9]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTACCGGCACTGCCACCGTTGTGGCTGAT
TGCAGCCATGCCGGTAGTGGCATTGATGGCGTTGCCGTTTCGAACCTATCCGCTGGGTTTCTTCCTGTTCGGGCTGGCCT
GGGCCTGTCTGTCGGCGCAGTTTGCGCTGGACGATCGGTTATCCGTCGCGCTCGATGGAGAAACCCGTTGGGTCGAGGGG
CGCGTCGTCGGTTTGCCGCAACAGGGCGATGGCGTGGTGCGTTTCGAACTGGCTGATGCCCATTCACGTCGTACCCGGCT
ACCGACGACACTGCGTCTCGCGTGGTTCGGTGGCCCGCCGGTCAACAGCGGCGAGCGCTGGCGATTGGCGGTGAAACTCA
AGCGACCCGCCGGGTTGCTGAACCCACACGGCTTCGATTATTCAGCCTGGTTGTTGAGTCGCGGTATCGGCGCGACCGGT
ACGGTCAAGGACGGCCGTCTTTTGCAGGCGGCCCGGGGCGCCTGGCGGGATGAGGTGCGCCAGGCACTGGCGCAGGTCGA
CGCCAACGGTCGCTCCGGTGCGCTGGCGGCGTTGGTTCTGGGCGACGGCGGCGGGCTGACTCGCGAAGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTTGCCGGCCTGGTGTACCTGTTG
GTGGCTGGCGCGGCGCGCTATGGCCTGTGGCCGGCAGGTCTGGCGTGGTTGCCTTGGGCCTGCGCGCTGGCCTTCTGCGC
CGCCCTGGGCTACGGCTTGCTCGCCGGGTTCGAGGTACCGGTGCGGCGGGCCTGCACGATGATCGGCCTGGTGCTGTTGT
GGCGCTTGCGCTTCAAGCAGCCAGATCCGTGGTGGACATGGCTGCTGGCCTTCGCCGGAGTGCTGGTGTTCGACCCGCTG
GCCAACCTGCGGCCAGGGTTCTGGTTATCGTTTGCGGCTGTCGCCATCTTGATGTTCACCTTTGGCGGTCGCCTGGGACC
CTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTCGTCGCGGTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGGT
TGCCGGTCAGTCTCAGCGGGCCGCTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTCTTGCCGTCGGCGCTG
CTCGGCACGGCGTTGTTGCCGGTCCCTCTCATTGGCGAAGGACTGCTGTGGATCGCCGGCGGACTGCTCGATCTGCTGTT
CAAGGGGCTGACGCTGGTCGCCGGACGAATGCCGGCCTGGGTCCCGGCCGCAGTCTCGACCTGGGCCCTGGGTATCGCCG
CCCTCGGCGCTTTTCTACTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTCCCACCGCAAGAACACCTGCCACCAGGGCAAGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGCCGGCACACCCTGCTATACGACGCCGGGCCGCGTTTTGGCGAGGCCGATGTGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGGGTTCGAGGCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCC
CCGGCCGTACGCAACGGGCTGCCGACGAGGGAAGTGATCAGCGGCGATCCCGATGCGCTGCCCGCCGAGTTGCTGGCCGG
GCCCTGCGACAGTGGCCGACGCTGGGAATGGGACGGAGTCGGGTTCGAGCTGTGGCGATGGGCCTCTGCCGTCGAAAGCA
ACCAGAAATCCTGTGTCTTGCTGGTGGAGGCCGGCGGTGAACGCTTACTGCTGACCGGCGATATCGACATCCATGCCGAA
CGCGCCTTGCTCGACGAGGCCCTGGCACTACCGATCCAGTGGCTGGCCGCGCCTCACCATGGCAGCCGCAGTTCGTCGTC
GATGGCGCTGCTGTCACGTCTCAAGCCGCATTCGGTGTTGATTTCCCGAGGGCAGGGCAACGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCCCGCTATCGACGCTCGGGCCTGGCGATCTACGACAGCGCCGAGCAGGGCGCCATTCGTCTGCAACTG
GGGGCTTTCGAGCTGCCGCGCACAGAGGCCGGACACCGACGTTACTGGCGCGATCGGCCAACAGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-166)

3D structure

• AlphaFold DB: A0A6N1CLG7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.391	95.856	0.579
comA	Ralstonia pseudosolanacearum GMI1000	32.349	100	0.366