Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GN234_RS26865 Genome accession   NZ_CP048810
Coordinates   6049812..6050447 (+) Length   211 a.a.
NCBI ID   WP_162893858.1    Uniprot ID   -
Organism   Pseudomonas bijieensis strain L22-9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6044812..6055447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN234_RS26845 (GN234_26755) - 6044951..6045883 (+) 933 WP_176689314.1 ABC transporter ATP-binding protein -
  GN234_RS26850 (GN234_26760) - 6045886..6046665 (+) 780 WP_072347169.1 ABC transporter permease -
  GN234_RS26855 (GN234_26765) - 6046810..6047325 (-) 516 WP_046063671.1 DUF2062 domain-containing protein -
  GN234_RS26860 (GN234_26770) comA 6047470..6049716 (+) 2247 WP_176689315.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GN234_RS26865 (GN234_26775) exbB 6049812..6050447 (+) 636 WP_162893858.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GN234_RS26870 (GN234_26780) - 6050444..6050872 (+) 429 WP_013694002.1 ExbD/TolR family protein -
  GN234_RS26875 (GN234_26785) lpxK 6050872..6051882 (+) 1011 WP_109754399.1 tetraacyldisaccharide 4'-kinase -
  GN234_RS26880 (GN234_26790) - 6051905..6052090 (+) 186 WP_003179363.1 Trm112 family protein -
  GN234_RS26885 (GN234_26795) kdsB 6052087..6052851 (+) 765 WP_109754398.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GN234_RS26890 (GN234_26800) - 6052851..6053315 (+) 465 WP_176689316.1 low molecular weight protein-tyrosine-phosphatase -
  GN234_RS26895 (GN234_26805) murB 6053312..6054331 (+) 1020 WP_109754396.1 UDP-N-acetylmuramate dehydrogenase -
  GN234_RS26900 (GN234_26810) - 6054598..6055068 (+) 471 WP_109754395.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.98 Da        Isoelectric Point: 7.3613

>NTDB_id=423175 GN234_RS26865 WP_162893858.1 6049812..6050447(+) (exbB) [Pseudomonas bijieensis strain L22-9]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGDKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=423175 GN234_RS26865 WP_162893858.1 6049812..6050447(+) (exbB) [Pseudomonas bijieensis strain L22-9]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCCTTGGGCGAAGTCCTCGCCGCCGGACTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGGACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACCGTGTTGGGCATGATCGACATCTTCA
GTGCGTTTACCGGCTCGGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGGATTTCCAAGGCCCTGATCACCACTGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTGGACGAACTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAAGGTGACCGTGATGTGGACCTGGCTGGGGACAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment