Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GN234_RS22755 Genome accession   NZ_CP048810
Coordinates   5172591..5173937 (-) Length   448 a.a.
NCBI ID   WP_163856580.1    Uniprot ID   -
Organism   Pseudomonas bijieensis strain L22-9     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5167591..5178937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN234_RS22740 (GN234_22665) - 5169251..5169652 (+) 402 WP_134925875.1 type IV pilin protein -
  GN234_RS22745 (GN234_22670) thiO 5169709..5170809 (+) 1101 WP_176689114.1 glycine oxidase ThiO -
  GN234_RS22750 (GN234_22675) - 5172051..5172416 (+) 366 WP_176689115.1 DUF6124 family protein -
  GN234_RS22755 (GN234_22680) pilR 5172591..5173937 (-) 1347 WP_163856580.1 sigma-54-dependent transcriptional regulator Regulator
  GN234_RS22760 (GN234_22685) pilS 5173934..5175523 (-) 1590 WP_176689116.1 two-component system sensor histidine kinase NtrB Regulator
  GN234_RS22765 (GN234_22690) - 5175513..5175746 (-) 234 WP_109756371.1 PP0621 family protein -
  GN234_RS22770 (GN234_22695) - 5175872..5176888 (-) 1017 WP_176689117.1 outer membrane protein assembly factor BamD -
  GN234_RS22775 (GN234_22700) rluD 5177040..5178002 (+) 963 WP_116833478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GN234_RS22780 (GN234_22705) pgeF 5177999..5178724 (+) 726 WP_163856586.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50158.55 Da        Isoelectric Point: 5.9858

>NTDB_id=423168 GN234_RS22755 WP_163856580.1 5172591..5173937(-) (pilR) [Pseudomonas bijieensis strain L22-9]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQSLLAGDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVSSALRLPPVALPASTIERCLLGDSPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPAKLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEQTRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=423168 GN234_RS22755 WP_163856580.1 5172591..5173937(-) (pilR) [Pseudomonas bijieensis strain L22-9]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTGGCCGAGGCCCAAAGCCTGCTGGCGGGGGATACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAGCGCTACCCGCAGCTGCCC
GTGGCGATGATCACTGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGGGTCGGTTGCGGGAGCTGGTCAGCAGCGCCCTGCGCCTGCCGCCGGTCGCTCTTCCGGCAAGCACTA
TCGAGCGTTGCCTGCTGGGTGACTCCCCGCCGATGCGCAATGTGCGCAAACAGATCGAAAAACTCGCTCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGGCCCCGTTCCAA
CCAGGGTTTTGTGCCAGTCAACTGTGGAGCGATTCCCACTGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTACTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCTGTTGGCGGCCAACAGGA
AGAAGTGGTGGACGTGCGAATTCTCTGCGCCACCCACAAGGACCTGGATGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTAAATGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAACGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGTCTGGCGGCCAACACCGGTAGTCCACCGGCCAAGTTGCATCCCCAGGCGTTGGACGCTCTCAG
GAATTACCGCTTCCCGGGCAACGTGCGGGAACTGGAGAACATGCTTGAACGTGCCTACACCCTTTGCGAACAGCAACAAA
TCGAAGCCGACGACCTGCGCCTGGCCGAGGGTAATAGTACTACTGAGGCGGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGCAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTAAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.378

99.107

0.777
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507

Multiple sequence alignment