Detailed information NTG0422654

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IFJ79_RS00790
• Genome accession: NZ_CP061778
• Coordinates: 165250..166122 (+)
• Length: 290 a.a.
• NCBI ID: WP_003116251.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain ZBX-P13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 160250..171122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IFJ79_RS00770 (IFJ79_00765)	-	160793..161491 (-)	699	WP_223677410.1	hypothetical protein	-
IFJ79_RS00775 (IFJ79_00770)	pilE	161555..162094 (-)	540	WP_033938465.1	pilin	Machinery gene
IFJ79_RS00780 (IFJ79_00775)	pilB	162323..164026 (+)	1704	WP_003116249.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IFJ79_RS00785 (IFJ79_00780)	pilC	164030..165247 (+)	1218	WP_003116250.1	type II secretion system F family protein	Machinery gene
IFJ79_RS00790 (IFJ79_00785)	pilD	165250..166122 (+)	873	WP_003116251.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
IFJ79_RS00795 (IFJ79_00790)	coaE	166119..166730 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
IFJ79_RS00800 (IFJ79_00795)	yacG	166727..166927 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
IFJ79_RS00805 (IFJ79_00800)	-	166964..167173 (-)	210	WP_003094660.1	hypothetical protein	-
IFJ79_RS00810 (IFJ79_00805)	-	167279..167968 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
IFJ79_RS00815 (IFJ79_00810)	-	167965..168435 (-)	471	WP_003094664.1	hypothetical protein	-
IFJ79_RS00820 (IFJ79_00815)	-	168432..168857 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
IFJ79_RS00825 (IFJ79_00820)	-	168990..169619 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
IFJ79_RS00830 (IFJ79_00825)	-	169616..170065 (+)	450	WP_023100233.1	MOSC domain-containing protein	-
IFJ79_RS00835 (IFJ79_00830)	-	170091..170261 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31871.89 Da
• Isoelectric Point: 7.3454

>NTDB_id=422654 IFJ79_RS00790 WP_003116251.1 165250..166122(+) (pilD) [Pseudomonas aeruginosa strain ZBX-P13]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=422654 IFJ79_RS00790 WP_003116251.1 165250..166122(+) (pilD) [Pseudomonas aeruginosa strain ZBX-P13]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGTTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	99.655	0.548
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472