Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   G3T49_RS03535 Genome accession   NZ_CP048756
Coordinates   699338..699649 (-) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS006     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694338..704649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T49_RS03515 (G3T49_03500) ctsE 695207..696766 (-) 1560 WP_167843238.1 GspE/PulE family protein Machinery gene
  G3T49_RS03520 (G3T49_03505) ctsX 696756..697343 (-) 588 WP_126211804.1 transformation system protein Machinery gene
  G3T49_RS03525 (G3T49_03510) ctsP 697347..697955 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  G3T49_RS03530 (G3T49_03515) ctsD 697948..699360 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T49_RS03535 (G3T49_03520) ctsR 699338..699649 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  G3T49_RS03540 (G3T49_03525) nifJ 699673..703233 (-) 3561 WP_002880446.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  G3T49_RS03545 (G3T49_03530) - 703326..703967 (-) 642 WP_052782179.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=422651 G3T49_RS03535 WP_002880445.1 699338..699649(-) (ctsR) [Campylobacter jejuni strain ZS006]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=422651 G3T49_RS03535 WP_002880445.1 699338..699649(-) (ctsR) [Campylobacter jejuni strain ZS006]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment