Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   GYK50_RS02265 Genome accession   NZ_CP048752
Coordinates   525061..525438 (+) Length   125 a.a.
NCBI ID   WP_057761576.1    Uniprot ID   A0A7U6KS11
Organism   Psychrobacter pacificensis strain WSY-P01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 520061..530438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYK50_RS02255 (GYK50_02255) - 522096..522818 (-) 723 WP_058025471.1 response regulator transcription factor -
  GYK50_RS02260 (GYK50_02260) - 523126..524382 (-) 1257 WP_212564178.1 HlyD family efflux transporter periplasmic adaptor subunit -
  GYK50_RS02265 (GYK50_02265) pilG 525061..525438 (+) 378 WP_057761576.1 twitching motility response regulator PilG Regulator
  GYK50_RS02270 (GYK50_02270) - 525622..525984 (+) 363 WP_071002986.1 response regulator -
  GYK50_RS02275 (GYK50_02275) - 525988..526518 (+) 531 WP_071002987.1 chemotaxis protein CheW -
  GYK50_RS02280 (GYK50_02280) - 526691..528106 (+) 1416 WP_058025475.1 methyl-accepting chemotaxis protein -
  GYK50_RS02285 (GYK50_02285) - 528282..529151 (+) 870 WP_212564487.1 chemotaxis protein CheR -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14054.13 Da        Isoelectric Point: 4.5807

>NTDB_id=422624 GYK50_RS02265 WP_057761576.1 525061..525438(+) (pilG) [Psychrobacter pacificensis strain WSY-P01]
MENNFEGLKVMVIDDSKTIRRTAETLLQKAGCEVVTAIDGFDALAKIVDNNPDIIFVDIMMPRLDGYQTCALIKNNPDYA
NKPVIMLSSKDGLFDKARGRIVGSDEYLTKPFSKDELFDAINQYR

Nucleotide


Download         Length: 378 bp        

>NTDB_id=422624 GYK50_RS02265 WP_057761576.1 525061..525438(+) (pilG) [Psychrobacter pacificensis strain WSY-P01]
ATGGAAAATAATTTTGAAGGTTTGAAAGTAATGGTGATTGATGATTCAAAAACCATTCGCCGTACCGCAGAAACCTTGCT
ACAAAAAGCGGGTTGTGAAGTCGTAACCGCTATAGATGGCTTCGATGCCTTAGCAAAAATTGTTGATAACAACCCAGATA
TTATTTTTGTCGACATCATGATGCCGCGCTTAGATGGCTATCAGACTTGTGCACTCATAAAAAATAACCCTGATTATGCT
AATAAACCCGTGATTATGTTGTCATCTAAAGATGGCTTATTTGATAAAGCCCGTGGCCGCATCGTCGGATCTGATGAGTA
TTTGACCAAACCATTTAGTAAAGATGAGCTTTTTGATGCGATTAACCAGTACCGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U6KS11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

78.226

99.2

0.776
  pilH Synechocystis sp. PCC 6803

41.228

91.2

0.376
  vicR Streptococcus mutans UA159

40.517

92.8

0.376

Multiple sequence alignment