Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   G3T51_RS01080 Genome accession   NZ_CP048732
Coordinates   204108..204635 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain NWAF26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199108..209635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T51_RS01050 - 199450..200253 (+) 804 WP_048542919.1 hypothetical protein -
  G3T51_RS01055 - 200298..201188 (-) 891 Protein_192 PhzF family phenazine biosynthesis isomerase -
  G3T51_RS01060 - 201228..201632 (-) 405 WP_053076886.1 nucleoside 2-deoxyribosyltransferase -
  G3T51_RS01065 - 201635..202480 (-) 846 WP_048542916.1 DUF2785 domain-containing protein -
  G3T51_RS01070 - 202521..203069 (-) 549 WP_172965086.1 nucleotidyltransferase family protein -
  G3T51_RS01075 rpsR 203806..204048 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  G3T51_RS01080 ssbA 204108..204635 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  G3T51_RS01085 rpsF 204663..204956 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  G3T51_RS01090 ychF 205128..206228 (-) 1101 WP_172965087.1 redox-regulated ATPase YchF -
  G3T51_RS01095 - 206232..206429 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  G3T51_RS01100 - 206453..207337 (-) 885 WP_049320694.1 mechanosensitive ion channel family protein -
  G3T51_RS01105 - 207349..208185 (-) 837 WP_048542910.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=422560 G3T51_RS01080 WP_025906200.1 204108..204635(-) (ssbA) [Mammaliicoccus sciuri strain NWAF26]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=422560 G3T51_RS01080 WP_025906200.1 204108..204635(-) (ssbA) [Mammaliicoccus sciuri strain NWAF26]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAATCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGTCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537

Multiple sequence alignment