Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   G3U99_RS02840 Genome accession   NZ_CP048693
Coordinates   595945..596577 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio coralliilyticus OCN008     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 590945..601577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS02815 (G3U99_02805) - 591109..593031 (+) 1923 WP_021455206.1 ABC transporter ATP-binding protein -
  G3U99_RS02820 (G3U99_02810) - 593028..593504 (+) 477 WP_021455207.1 TIGR02444 family protein -
  G3U99_RS02825 (G3U99_02815) - 593516..594493 (+) 978 WP_021455208.1 hydrolase -
  G3U99_RS02830 (G3U99_02820) - 594533..594745 (+) 213 WP_021455209.1 YheU family protein -
  G3U99_RS02835 (G3U99_02825) - 594833..595702 (+) 870 WP_019276788.1 phosphoribulokinase -
  G3U99_RS02840 (G3U99_02830) crp 595945..596577 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  G3U99_RS02845 (G3U99_02835) - 596705..597496 (-) 792 WP_021455210.1 DUF1338 domain-containing protein -
  G3U99_RS02850 (G3U99_02840) astD 597675..599132 (-) 1458 WP_165579448.1 succinylglutamate-semialdehyde dehydrogenase -
  G3U99_RS02855 (G3U99_02845) astA 599150..600169 (-) 1020 WP_006963238.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=422382 G3U99_RS02840 WP_004410522.1 595945..596577(+) (crp) [Vibrio coralliilyticus OCN008]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=422382 G3U99_RS02840 WP_004410522.1 595945..596577(+) (crp) [Vibrio coralliilyticus OCN008]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCGTCAAA
AAGCACGCTGATCCACGCGGGCGAAAAAGCAGAGACTCTTTACTACATTGTTAAAGGTTCTGTTGCAGTACTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTTTATTCGAAGAAGAC
CAAGAGCGTACGGCATGGGTTCGTGCGAAATCTCCTTGTGAAGTAGCAGAAATTTCATTCAAGAAATTCCGTCAGCTAAT
CCAAGTTAACCCTGACATCCTGATGCGCCTGTCTGCACAAATGGCAAGCCGTCTACAGGTAACCAGTCAGAAAGTGGGTG
ACTTGGCATTCCTAGACGTAACAGGTCGCATCGCGCAAACACTGCTTAACCTGGCGAAACAGCCAGATGCAATGACGCAC
CCAGACGGCATGCAGATCAAGATCACTCGTCAAGAAATCGGTCAGATTGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCCCACGGTAAGACAATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment