Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   G0030_RS08960 Genome accession   NZ_CP048681
Coordinates   1903564..1904268 (+) Length   234 a.a.
NCBI ID   WP_005177031.1    Uniprot ID   A0A6C0Y3U4
Organism   Acinetobacter indicus strain Q186-3_T     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1898564..1909268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS08950 (G0030_08940) clpB 1900090..1902669 (-) 2580 WP_005177034.1 ATP-dependent chaperone ClpB -
  G0030_RS08955 (G0030_08945) - 1902994..1903416 (-) 423 WP_005177032.1 OsmC family protein -
  G0030_RS08960 (G0030_08950) crp 1903564..1904268 (+) 705 WP_005177031.1 cAMP-activated global transcriptional regulator CRP Regulator
  G0030_RS08965 (G0030_08955) - 1904439..1905488 (+) 1050 WP_180181927.1 NADP(H)-dependent aldo-keto reductase -
  G0030_RS08970 (G0030_08960) - 1905577..1906359 (-) 783 WP_005177027.1 M48 family metallopeptidase -
  G0030_RS08975 (G0030_08965) - 1906522..1906830 (-) 309 WP_180181926.1 hypothetical protein -
  G0030_RS08980 (G0030_08970) - 1906919..1907704 (-) 786 WP_075166666.1 M48 family metallopeptidase -
  G0030_RS08985 (G0030_08975) - 1907841..1909160 (-) 1320 WP_005177019.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26315.89 Da        Isoelectric Point: 4.6470

>NTDB_id=422241 G0030_RS08960 WP_005177031.1 1903564..1904268(+) (crp) [Acinetobacter indicus strain Q186-3_T]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNDAADEQFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=422241 G0030_RS08960 WP_005177031.1 1903564..1904268(+) (crp) [Acinetobacter indicus strain Q186-3_T]
ATGACTTCAAACTTTTCACAATTAAGCACCGATGCCCTGTCTCCTGGTCAATTACCAGATTCAGTCAAGGCATTATTAAA
ACGTGCATATATCAACCGTTATCCGAAACGGACCACAATTGTTGATGCGGGGTCTGAATCAAAATCACTTTATTTGATTC
TGAAAGGATCTGTTTCCATCATTCTGCGTGAAGATGATGATCGCGAAATTGTTGTGGCGTATTTGAATCCGGGTGACTTC
TTTGGGGAAATGGGTCTATTCGAAGCAAATCCACAACGTACTGCAGAAGTACGCACACGTGACGTTTGTGAAATTGCCGA
AGTGACTTATGAAAACTTCCACGAGCTCAGCAAGCAATATCCAGATTTAAGCTATGCGGTATTTGCCCAACTGGTGCGCC
GTTTAAAAAATACCACGCGTAAAGTGACCGATCTGGCCTTCATTGATGTTTCAGGCCGTATTGCGCGTTGTCTGATTGAC
CTGTCTGCGCAGCCTGAAGCCATGATTTTGCCAAATGGCCGTCAAATCCGCATTACCCGTCAGGAAATTGGCCGCATTGT
TGGCTGTTCACGTGAAATGGTCGGCCGTGTTCTGAAAACCCTGGAAGAACAAGGCATGATCGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCCTCTTTAGAGCAAAATGATGCAGCAGATGAACAGTTTGATGATGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0Y3U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.026

100

0.91
  crp Vibrio cholerae strain A1552

46.829

87.607

0.41
  crp Haemophilus influenzae Rd KW20

47.179

83.333

0.393

Multiple sequence alignment