Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   G0028_RS17140 Genome accession   NZ_CP048659
Coordinates   3462839..3463267 (-) Length   142 a.a.
NCBI ID   WP_227554747.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3457839..3468267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS17105 (G0028_17075) - 3457989..3459014 (+) 1026 WP_180046329.1 lipase secretion chaperone -
  G0028_RS17110 (G0028_17080) - 3459068..3460027 (+) 960 WP_180046331.1 lipase family alpha/beta hydrolase -
  G0028_RS17115 (G0028_17085) rplS 3460098..3460469 (-) 372 WP_174493840.1 50S ribosomal protein L19 -
  G0028_RS17120 (G0028_17090) trmD 3460642..3461391 (-) 750 WP_180046332.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G0028_RS17125 (G0028_17095) rimM 3461433..3461981 (-) 549 WP_174493842.1 ribosome maturation factor RimM -
  G0028_RS17130 (G0028_17100) rpsP 3462010..3462267 (-) 258 WP_004826436.1 30S ribosomal protein S16 -
  G0028_RS17135 (G0028_17105) - 3462414..3462803 (-) 390 WP_218946327.1 type IV pilin protein -
  G0028_RS17140 (G0028_17110) comE 3462839..3463267 (-) 429 WP_227554747.1 type IV pilin protein Machinery gene
  G0028_RS17145 (G0028_17115) - 3463315..3464262 (+) 948 WP_180048122.1 IS30 family transposase -
  G0028_RS17150 (G0028_17120) - 3464284..3464793 (-) 510 WP_218946376.1 type IV pilin protein -
  G0028_RS17155 (G0028_17125) comE 3464774..3465208 (-) 435 WP_180047655.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15721.57 Da        Isoelectric Point: 6.4498

>NTDB_id=422176 G0028_RS17140 WP_227554747.1 3462839..3463267(-) (comE) [Acinetobacter piscicola strain YH12207_T]
MLPSNNLISVALHLRIQGRANVAQAQQEMQKIAEQLERYKARNFSFKGFNANYLYPSNSVFDVSSQTLNLNSKYTITLVD
SMTGNPLLTDSSSSGQGWSIKAISQDPANYSLLLTSAGVHCKNITQKNMDYDSCGDAGFEEW

Nucleotide


Download         Length: 429 bp        

>NTDB_id=422176 G0028_RS17140 WP_227554747.1 3462839..3463267(-) (comE) [Acinetobacter piscicola strain YH12207_T]
TTGCTTCCTTCCAATAATTTAATCTCTGTTGCACTTCATTTGAGAATCCAAGGGCGAGCCAATGTTGCTCAAGCGCAACA
AGAAATGCAGAAAATTGCAGAGCAATTAGAGCGTTATAAGGCTCGGAATTTTAGTTTTAAAGGGTTTAATGCCAATTATC
TGTACCCAAGTAACTCTGTATTTGATGTGTCATCACAAACTTTAAATTTAAACTCAAAATATACGATTACTTTGGTCGAT
AGTATGACTGGAAATCCACTGTTGACAGACTCGTCTTCAAGTGGGCAAGGCTGGTCAATTAAAGCCATAAGCCAAGATCC
TGCGAATTACTCATTATTATTAACCAGTGCAGGTGTACATTGTAAAAATATCACACAGAAAAATATGGACTATGACTCGT
GTGGTGATGCAGGTTTTGAGGAGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(19-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

54.478

94.366

0.514

Multiple sequence alignment