Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   G0028_RS06970 Genome accession   NZ_CP048659
Coordinates   1438614..1439321 (-) Length   235 a.a.
NCBI ID   WP_130072700.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433614..1444321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS06955 (G0028_06945) - 1434487..1435833 (+) 1347 WP_180044736.1 dicarboxylate/amino acid:cation symporter -
  G0028_RS06960 (G0028_06950) - 1436151..1437293 (+) 1143 WP_180044735.1 acyl-CoA dehydrogenase family protein -
  G0028_RS06965 (G0028_06955) - 1437392..1438441 (-) 1050 WP_180044734.1 NADP(H)-dependent aldo-keto reductase -
  G0028_RS06970 (G0028_06960) crp 1438614..1439321 (-) 708 WP_130072700.1 cAMP-activated global transcriptional regulator CRP Regulator
  G0028_RS06975 (G0028_06965) - 1439470..1439892 (+) 423 WP_130072698.1 OsmC family protein -
  G0028_RS06980 (G0028_06970) - 1440108..1440908 (-) 801 WP_180044733.1 peptidoglycan DD-metalloendopeptidase family protein -
  G0028_RS06985 (G0028_06975) - 1441116..1443086 (-) 1971 WP_180044732.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  G0028_RS06990 (G0028_06980) - 1443061..1443993 (-) 933 WP_180044731.1 family 2A encapsulin nanocompartment shell protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26447.96 Da        Isoelectric Point: 4.6020

>NTDB_id=422165 G0028_RS06970 WP_130072700.1 1438614..1439321(-) (crp) [Acinetobacter piscicola strain YH12207_T]
MSSNLAQLSTDALSPGQLPESVKALLKRAHINRFPKRTTIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYENFHDISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEESSYSDDDEQDDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=422165 G0028_RS06970 WP_130072700.1 1438614..1439321(-) (crp) [Acinetobacter piscicola strain YH12207_T]
ATGTCTTCTAATTTAGCACAACTAAGTACAGACGCTTTATCACCAGGACAACTGCCTGAATCTGTCAAAGCATTACTCAA
GCGTGCTCACATCAATCGCTTCCCGAAACGTACCACTATTGTTGATGCGGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAGGGATCAGTATCAATCATTTTACGTGAAGATGATGATCGTGAAATTGTGGTTGCATATCTCAATCCAGGCGATTTC
TTCGGGGAAATGGGGTTGTTTGAACAAAACCCACAACGTACAGCAGAAGTAAGAACACGTGATGTTTGTGAAATTGCTGA
AATTTCTTATGAGAATTTTCATGACATCAGCAAACAATATCCTGACTTAAGCTATGCTGTTTTCGCACAATTGGTCAGAC
GTTTAAAAAATACGACGCGCAAAGTAACAGACTTGGCATTTATTGATGTGTCGGGTCGTATTGCACGTTGTTTGATTGAT
CTTTCATCACAACCTGAAGCCATGATTTTACCAAATGGCCGTCAAATCCGCATTACTCGTCAGGAAATTGGACGTATTGT
GGGTTGTTCTCGTGAAATGGTGGGGCGTGTTCTGAAAACACTTGAAGAACAAGGCATGATCGAAACAGATGGTAAAGCAA
TTTTAATTTTTGATGTCTCTTTAGAAGAATCTTCGTATTCTGACGACGATGAACAAGATGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.213

100

0.902
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

47.668

82.128

0.391

Multiple sequence alignment