Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   G0027_RS06475 Genome accession   NZ_CP048654
Coordinates   1354261..1355121 (+) Length   286 a.a.
NCBI ID   WP_127801107.1    Uniprot ID   A0A7S6VPI1
Organism   Acinetobacter indicus strain C15_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349261..1360121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0027_RS06455 (G0027_06465) secG 1349874..1350203 (-) 330 WP_005181783.1 preprotein translocase subunit SecG -
  G0027_RS06460 (G0027_06470) tpiA 1350217..1351008 (-) 792 WP_005181780.1 triose-phosphate isomerase -
  G0027_RS06465 (G0027_06475) pilB 1351298..1353004 (+) 1707 WP_016659655.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G0027_RS06470 (G0027_06480) pilC 1353035..1354261 (+) 1227 WP_127801106.1 type II secretion system F family protein Machinery gene
  G0027_RS06475 (G0027_06485) pilD 1354261..1355121 (+) 861 WP_127801107.1 A24 family peptidase Machinery gene
  G0027_RS06480 (G0027_06490) coaE 1355132..1355740 (+) 609 WP_005181773.1 dephospho-CoA kinase -
  G0027_RS06485 (G0027_06495) - 1355737..1356657 (-) 921 WP_016659657.1 DMT family transporter -
  G0027_RS06490 (G0027_06500) rlmB 1356675..1357427 (-) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G0027_RS06495 (G0027_06505) - 1357533..1357856 (-) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32034.30 Da        Isoelectric Point: 7.8299

>NTDB_id=422118 G0027_RS06475 WP_127801107.1 1354261..1355121(+) (pilD) [Acinetobacter indicus strain C15_T]
MQEFIHYLIQHPTALYFVVGIFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKISLSQPASTCPKCHSP
IRWYQNIPVISWLLLRGKCGQCQNPISIRYPFIELLTAVCALTVAAVFGPTLQMLFGLVLTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTSASSAIWGYIIGFLCLWVVYYLFKLLTGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGDAIMKLYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=422118 G0027_RS06475 WP_127801107.1 1354261..1355121(+) (pilD) [Acinetobacter indicus strain C15_T]
ATGCAAGAATTCATTCATTATCTGATTCAACACCCAACTGCGCTGTATTTCGTAGTTGGGATTTTTAGTTTATGTATTGG
CAGTTTTCTGAATGTGGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGCAATGACTGTCAAATGCTGCTGC
ATCCTGAACAGGCCATCATTGATGAAAGCAAAATCAGCCTCAGTCAGCCAGCCTCGACCTGTCCGAAATGCCACAGCCCG
ATTCGCTGGTATCAGAATATTCCAGTAATCAGCTGGCTGCTTCTACGTGGCAAATGTGGCCAATGCCAAAACCCGATCAG
TATTCGTTATCCTTTTATTGAACTGCTGACCGCAGTGTGTGCCTTAACCGTAGCCGCGGTTTTTGGCCCGACCCTGCAAA
TGCTGTTTGGCCTGGTGTTGACCTATGTGTTAATTGCCCTGACCTTTATTGATTTTGACACCCAGCTGCTGCCTGACCGC
TATACCCTCCCCCTGGCTGCACTCGGCTTGGGGGTGAACAGCTATGCCCTGTACACCTCCGCTAGCTCTGCCATTTGGGG
ATATATCATTGGCTTTTTATGTCTGTGGGTGGTGTATTACCTGTTTAAGCTGTTGACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTGCTGGCCGCCTTAGGTGCCTGGATGGGCCCGCTGATGCTGCCGCTGATTGTGTTGCTATCTTCTCTG
GTTGGTGCAATCATTGGCATTATTTTGCTGAAAATCCGCAAAGAGAACCAGCCTTTTGCCTTTGGCCCTTATATTGCCAT
TGCCGGCTGGATCGCCTTTTTGTGGGGTGATGCAATCATGAAGCTTTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6VPI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

79.649

99.65

0.794
  pilD Acinetobacter baumannii D1279779

79.298

99.65

0.79
  pilD Vibrio cholerae strain A1552

56.18

93.357

0.524
  pilD Vibrio campbellii strain DS40M4

53.933

93.357

0.504
  pilD Neisseria gonorrhoeae MS11

48.473

91.608

0.444

Multiple sequence alignment