Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G3T12_RS04970 | Genome accession | NZ_CP048623 |
| Coordinates | 1039165..1039650 (+) | Length | 161 a.a. |
| NCBI ID | WP_064535069.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain WHH1155 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1027986..1068255 | 1039165..1039650 | within | 0 |
Gene organization within MGE regions
Location: 1027986..1068255
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3T12_RS04865 (G3T12_04975) | - | 1027986..1029170 (-) | 1185 | Protein_928 | tyrosine-type recombinase/integrase | - |
| G3T12_RS04870 (G3T12_04980) | - | 1029317..1029547 (+) | 231 | WP_223804796.1 | hypothetical protein | - |
| G3T12_RS04875 (G3T12_04985) | - | 1029515..1030516 (-) | 1002 | WP_394535228.1 | hypothetical protein | - |
| G3T12_RS04880 (G3T12_04990) | - | 1030627..1030830 (-) | 204 | WP_064535051.1 | hypothetical protein | - |
| G3T12_RS04885 (G3T12_04995) | - | 1030854..1031279 (-) | 426 | WP_064535053.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| G3T12_RS04890 (G3T12_05000) | - | 1031665..1031883 (+) | 219 | WP_016364974.1 | hypothetical protein | - |
| G3T12_RS04895 (G3T12_05005) | - | 1031884..1032639 (-) | 756 | WP_003606998.1 | hypothetical protein | - |
| G3T12_RS04900 (G3T12_05010) | - | 1032746..1033447 (-) | 702 | WP_064535055.1 | DUF3862 domain-containing protein | - |
| G3T12_RS04905 (G3T12_05015) | - | 1033507..1033929 (-) | 423 | WP_064535057.1 | ImmA/IrrE family metallo-endopeptidase | - |
| G3T12_RS04910 (G3T12_05020) | - | 1033919..1034254 (-) | 336 | WP_005714743.1 | helix-turn-helix domain-containing protein | - |
| G3T12_RS04915 (G3T12_05025) | - | 1034392..1034634 (+) | 243 | WP_064535059.1 | helix-turn-helix transcriptional regulator | - |
| G3T12_RS04920 (G3T12_05030) | - | 1034721..1034906 (-) | 186 | WP_003580689.1 | DUF1508 domain-containing protein | - |
| G3T12_RS04925 | - | 1034994..1035152 (+) | 159 | WP_191981448.1 | hypothetical protein | - |
| G3T12_RS04930 (G3T12_05035) | - | 1035218..1035766 (+) | 549 | WP_003582311.1 | hypothetical protein | - |
| G3T12_RS04935 (G3T12_05040) | - | 1035745..1035975 (+) | 231 | WP_005711341.1 | hypothetical protein | - |
| G3T12_RS04940 | - | 1035979..1036107 (+) | 129 | WP_005711343.1 | hypothetical protein | - |
| G3T12_RS04945 (G3T12_05045) | - | 1036119..1036337 (+) | 219 | WP_064535061.1 | hypothetical protein | - |
| G3T12_RS04950 | - | 1036339..1036509 (+) | 171 | WP_168163030.1 | hypothetical protein | - |
| G3T12_RS04955 (G3T12_05050) | - | 1036521..1037396 (+) | 876 | WP_064535063.1 | recombinase RecT | - |
| G3T12_RS04960 (G3T12_05055) | - | 1037416..1038180 (+) | 765 | WP_064535065.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| G3T12_RS04965 (G3T12_05060) | - | 1038196..1039152 (+) | 957 | WP_064535067.1 | DnaD domain-containing protein | - |
| G3T12_RS04970 (G3T12_05065) | ssb | 1039165..1039650 (+) | 486 | WP_064535069.1 | single-stranded DNA-binding protein | Machinery gene |
| G3T12_RS04975 (G3T12_05070) | - | 1039959..1040174 (+) | 216 | WP_015764329.1 | helix-turn-helix transcriptional regulator | - |
| G3T12_RS04980 (G3T12_05075) | - | 1040171..1040620 (+) | 450 | WP_064535071.1 | hypothetical protein | - |
| G3T12_RS04985 (G3T12_05080) | - | 1040623..1041006 (+) | 384 | WP_064535073.1 | DUF1064 domain-containing protein | - |
| G3T12_RS04990 | - | 1041018..1041143 (+) | 126 | WP_394535233.1 | hypothetical protein | - |
| G3T12_RS04995 (G3T12_05085) | - | 1041140..1041349 (+) | 210 | WP_064535075.1 | hypothetical protein | - |
| G3T12_RS05000 (G3T12_05090) | - | 1041421..1041732 (+) | 312 | WP_064535077.1 | hypothetical protein | - |
| G3T12_RS05005 (G3T12_05095) | - | 1041722..1042078 (+) | 357 | WP_064535079.1 | hypothetical protein | - |
| G3T12_RS05010 (G3T12_05100) | - | 1042075..1042314 (+) | 240 | WP_014569479.1 | hypothetical protein | - |
| G3T12_RS05015 (G3T12_05105) | - | 1042728..1043156 (+) | 429 | WP_064535081.1 | hypothetical protein | - |
| G3T12_RS05020 (G3T12_05110) | - | 1043579..1044151 (+) | 573 | WP_064535084.1 | hypothetical protein | - |
| G3T12_RS05025 (G3T12_05115) | - | 1044782..1045999 (+) | 1218 | WP_064535086.1 | GcrA family cell cycle regulator | - |
| G3T12_RS05030 (G3T12_05120) | - | 1045986..1046564 (+) | 579 | WP_064535088.1 | NUMOD4 domain-containing protein | - |
| G3T12_RS05035 (G3T12_05125) | - | 1046557..1046877 (+) | 321 | WP_064535090.1 | hypothetical protein | - |
| G3T12_RS05040 (G3T12_05130) | - | 1046914..1047486 (+) | 573 | WP_064535092.1 | terminase small subunit | - |
| G3T12_RS05045 (G3T12_05135) | - | 1047470..1048723 (+) | 1254 | WP_064535094.1 | PBSX family phage terminase large subunit | - |
| G3T12_RS05050 (G3T12_05140) | - | 1048728..1050155 (+) | 1428 | WP_064535096.1 | phage portal protein | - |
| G3T12_RS05055 (G3T12_05145) | - | 1050121..1051113 (+) | 993 | WP_064535098.1 | minor capsid protein | - |
| G3T12_RS05060 (G3T12_05150) | - | 1051238..1051894 (+) | 657 | WP_064535100.1 | DUF4355 domain-containing protein | - |
| G3T12_RS05065 (G3T12_05155) | - | 1051910..1052923 (+) | 1014 | WP_064535102.1 | hypothetical protein | - |
| G3T12_RS05070 (G3T12_05160) | - | 1053151..1053525 (+) | 375 | WP_064535103.1 | phage head-tail connector protein | - |
| G3T12_RS05075 (G3T12_05165) | - | 1053530..1053832 (+) | 303 | WP_064535105.1 | hypothetical protein | - |
| G3T12_RS05080 (G3T12_05170) | - | 1053829..1054194 (+) | 366 | WP_003575581.1 | hypothetical protein | - |
| G3T12_RS05085 (G3T12_05175) | - | 1054195..1054599 (+) | 405 | WP_064535106.1 | DUF3168 domain-containing protein | - |
| G3T12_RS05090 (G3T12_05180) | - | 1054611..1055210 (+) | 600 | WP_064535109.1 | phage tail tube protein | - |
| G3T12_RS05095 (G3T12_05185) | - | 1055297..1055629 (+) | 333 | WP_064535111.1 | tail assembly chaperone | - |
| G3T12_RS05100 (G3T12_05190) | - | 1055734..1056087 (+) | 354 | WP_064535124.1 | hypothetical protein | - |
| G3T12_RS05105 (G3T12_05195) | - | 1056080..1059169 (+) | 3090 | WP_064535113.1 | tape measure protein | - |
| G3T12_RS05110 (G3T12_05200) | - | 1059170..1061215 (+) | 2046 | WP_064535115.1 | distal tail protein Dit | - |
| G3T12_RS05115 (G3T12_05205) | - | 1061216..1063750 (+) | 2535 | WP_394535238.1 | phage tail protein | - |
| G3T12_RS05120 (G3T12_05210) | - | 1063760..1064050 (+) | 291 | WP_394535239.1 | hypothetical protein | - |
| G3T12_RS05125 (G3T12_05215) | - | 1064043..1064174 (+) | 132 | WP_003573798.1 | XkdX family protein | - |
| G3T12_RS05130 (G3T12_05220) | - | 1064204..1064494 (+) | 291 | WP_025013871.1 | hypothetical protein | - |
| G3T12_RS05135 (G3T12_05225) | - | 1064487..1064933 (+) | 447 | WP_064535119.1 | phage holin | - |
| G3T12_RS05140 (G3T12_05230) | - | 1064944..1066242 (+) | 1299 | WP_064535122.1 | LysM peptidoglycan-binding domain-containing protein | - |
| G3T12_RS05145 | - | 1066441..1066515 (+) | 75 | Protein_984 | glucose-6-phosphate isomerase | - |
| G3T12_RS05150 (G3T12_05235) | - | 1066822..1067109 (-) | 288 | WP_047676081.1 | putative quinol monooxygenase | - |
| G3T12_RS05155 (G3T12_05240) | - | 1067404..1068255 (-) | 852 | WP_047676079.1 | DNA/RNA non-specific endonuclease | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17662.44 Da Isoelectric Point: 8.9824
>NTDB_id=421906 G3T12_RS04970 WP_064535069.1 1039165..1039650(+) (ssb) [Lacticaseibacillus rhamnosus strain WHH1155]
MLNSVSLTGRMTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFAKFTKKGSLVGVEGRIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASATATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
MLNSVSLTGRMTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFAKFTKKGSLVGVEGRIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASATATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=421906 G3T12_RS04970 WP_064535069.1 1039165..1039650(+) (ssb) [Lacticaseibacillus rhamnosus strain WHH1155]
TTGCTAAACAGTGTCTCACTAACAGGCCGGATGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAAATTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGACAGAAAGTGTTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAACAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
TTGCTAAACAGTGTCTCACTAACAGGCCGGATGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAAATTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGACAGAAAGTGTTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAACAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.209 |
100 |
0.665 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.837 |
100 |
0.522 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
65.839 |
0.36 |