Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   G3A45_RS05910 Genome accession   NZ_CP048617
Coordinates   1089709..1090419 (+) Length   236 a.a.
NCBI ID   WP_163234830.1    Uniprot ID   A0A6P1YCS1
Organism   Caloranaerobacter azorensis strain T3-1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084709..1095419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3A45_RS05880 (G3A45_05890) - 1084929..1085180 (+) 252 WP_163234825.1 hypothetical protein -
  G3A45_RS05885 (G3A45_05895) - 1085896..1086243 (+) 348 WP_163234826.1 hypothetical protein -
  G3A45_RS13500 - 1086916..1087143 (-) 228 WP_250160209.1 reverse transcriptase domain-containing protein -
  G3A45_RS05895 (G3A45_05905) - 1087136..1087861 (-) 726 WP_163234827.1 ABC transporter permease -
  G3A45_RS05900 (G3A45_05910) - 1087875..1088627 (-) 753 WP_163234828.1 ABC transporter permease -
  G3A45_RS05905 (G3A45_05915) - 1088624..1089535 (-) 912 WP_163234829.1 ABC transporter ATP-binding protein -
  G3A45_RS05910 (G3A45_05920) scnR 1089709..1090419 (+) 711 WP_163234830.1 response regulator transcription factor Regulator
  G3A45_RS05915 (G3A45_05925) - 1090424..1091812 (+) 1389 WP_163234831.1 HAMP domain-containing sensor histidine kinase -
  G3A45_RS05920 (G3A45_05930) - 1091844..1092194 (+) 351 WP_035164037.1 hypothetical protein -
  G3A45_RS05925 (G3A45_05935) - 1092453..1093364 (-) 912 WP_163234832.1 IS110 family transposase -
  G3A45_RS05930 (G3A45_05940) - 1093468..1094643 (-) 1176 WP_163234360.1 IS110 family transposase -
  G3A45_RS05935 (G3A45_05945) - 1094968..1095363 (-) 396 WP_163234833.1 transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27070.76 Da        Isoelectric Point: 8.1068

>NTDB_id=421846 G3A45_RS05910 WP_163234830.1 1089709..1090419(+) (scnR) [Caloranaerobacter azorensis strain T3-1]
MENIKNKKILIVDDEPEIRKMIESFLRKEGFFRIYLASTCEEALAICRLNKPHIAILDVMLPDGDGFELFSSIRQFSQMP
VIFLTAKGEDQDRLLGLGLGADDYIVKPFLPRELILRLTAILKRVYTNTIKQRLPVFKLEGCIVDLESAIVRSNKGEQTL
TAKEHGLLLKLYENKGRIVTSDALCEAVWGDDYYGYENSLMVHIRRIREKIEINPSKPKNLLTIRGLGYKLIVKEE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=421846 G3A45_RS05910 WP_163234830.1 1089709..1090419(+) (scnR) [Caloranaerobacter azorensis strain T3-1]
ATGGAAAATATAAAAAATAAAAAAATACTTATCGTAGATGATGAACCTGAAATTAGAAAGATGATAGAAAGTTTTTTGCG
AAAGGAAGGATTTTTTCGTATATATCTTGCTTCAACCTGTGAGGAAGCTTTAGCAATTTGTCGTTTAAATAAGCCACATA
TTGCAATTCTTGATGTTATGCTTCCAGATGGTGATGGTTTTGAGTTATTTTCATCAATACGACAGTTCTCTCAAATGCCG
GTAATTTTCTTAACAGCAAAAGGAGAGGATCAAGATCGTCTATTAGGTCTTGGACTTGGTGCCGATGATTATATTGTTAA
ACCTTTTTTGCCGCGAGAACTTATTCTTAGACTTACAGCTATACTCAAACGAGTTTATACTAATACAATAAAACAGCGTT
TACCAGTTTTTAAGTTGGAAGGATGTATTGTAGATTTGGAAAGTGCTATAGTACGCAGTAATAAAGGAGAACAAACGTTG
ACAGCAAAAGAACATGGTCTTCTTTTGAAATTGTATGAAAATAAAGGACGTATTGTTACTAGCGACGCTTTATGTGAAGC
AGTATGGGGTGATGATTATTATGGTTATGAAAATAGTTTAATGGTGCATATTAGACGGATACGGGAGAAAATTGAGATAA
ATCCATCTAAACCTAAAAATCTTCTTACTATAAGAGGATTAGGATATAAGCTAATAGTGAAGGAGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1YCS1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.351

97.881

0.483
  micA Streptococcus pneumoniae Cp1015

42.373

100

0.424
  vicR Streptococcus mutans UA159

42.06

98.729

0.415

Multiple sequence alignment