Detailed information NTG0421698

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: G3M67_RS00910
• Genome accession: NZ_CP048601
• Coordinates: 195065..196201 (-)
• Length: 378 a.a.
• NCBI ID: WP_021173411.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 27
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 190065..201201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M67_RS08125	-	190850..191130 (+)	281	Protein_180	hypothetical protein	-
G3M67_RS00895 (G3M67_00895)	-	191472..192404 (-)	933	WP_001948438.1	GDP-L-fucose synthase	-
G3M67_RS00900 (G3M67_00900)	gmd	192397..193542 (-)	1146	WP_000659870.1	GDP-mannose 4,6-dehydratase	-
G3M67_RS00905 (G3M67_00905)	-	193583..194995 (-)	1413	WP_163524293.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
G3M67_RS00910 (G3M67_00910)	comB10	195065..196201 (-)	1137	WP_021173411.1	DNA type IV secretion system protein ComB10	Machinery gene
G3M67_RS00915 (G3M67_00915)	comB9	196194..197231 (-)	1038	WP_163524294.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
G3M67_RS00920 (G3M67_00920)	comB8	197231..197974 (-)	744	WP_128039635.1	virB8 family protein	Machinery gene
G3M67_RS00925 (G3M67_00925)	comB7	197971..198084 (-)	114	WP_001217875.1	hypothetical protein	Machinery gene
G3M67_RS00930 (G3M67_00930)	comB6	198100..199155 (-)	1056	WP_163525587.1	P-type conjugative transfer protein TrbL	Machinery gene
G3M67_RS00935 (G3M67_00935)	-	199163..200167 (-)	1005	WP_163525588.1	PDZ domain-containing protein	-
G3M67_RS00940 (G3M67_00940)	-	200167..200469 (-)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
G3M67_RS00945 (G3M67_00945)	panD	200472..200825 (-)	354	WP_097705594.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42036.47 Da
• Isoelectric Point: 9.7760

>NTDB_id=421698 G3M67_RS00910 WP_021173411.1 195065..196201(-) (comB10) [Helicobacter pylori strain GCT 27]
MNKWLKGALIVAGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTSPPMDPKTNTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=421698 G3M67_RS00910 WP_021173411.1 195065..196201(-) (comB10) [Helicobacter pylori strain GCT 27]
ATGAATAAGTGGCTTAAGGGGGCGTTGATTGTTGCAGGGGGTTTTGCCACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCCAAAGAGGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATTGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGTTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.767	100	0.958