Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   G3M67_RS00920 Genome accession   NZ_CP048601
Coordinates   197231..197974 (-) Length   247 a.a.
NCBI ID   WP_128039635.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 27     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 192231..202974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M67_RS00900 (G3M67_00900) gmd 192397..193542 (-) 1146 WP_000659870.1 GDP-mannose 4,6-dehydratase -
  G3M67_RS00905 (G3M67_00905) - 193583..194995 (-) 1413 WP_163524293.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  G3M67_RS00910 (G3M67_00910) comB10 195065..196201 (-) 1137 WP_021173411.1 DNA type IV secretion system protein ComB10 Machinery gene
  G3M67_RS00915 (G3M67_00915) comB9 196194..197231 (-) 1038 WP_163524294.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  G3M67_RS00920 (G3M67_00920) comB8 197231..197974 (-) 744 WP_128039635.1 virB8 family protein Machinery gene
  G3M67_RS00925 (G3M67_00925) comB7 197971..198084 (-) 114 WP_001217875.1 hypothetical protein Machinery gene
  G3M67_RS00930 (G3M67_00930) comB6 198100..199155 (-) 1056 WP_163525587.1 P-type conjugative transfer protein TrbL Machinery gene
  G3M67_RS00935 (G3M67_00935) - 199163..200167 (-) 1005 WP_163525588.1 PDZ domain-containing protein -
  G3M67_RS00940 (G3M67_00940) - 200167..200469 (-) 303 WP_000347931.1 YbaB/EbfC family nucleoid-associated protein -
  G3M67_RS00945 (G3M67_00945) panD 200472..200825 (-) 354 WP_097705594.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28780.00 Da        Isoelectric Point: 8.9604

>NTDB_id=421700 G3M67_RS00920 WP_128039635.1 197231..197974(-) (comB8) [Helicobacter pylori strain GCT 27]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=421700 G3M67_RS00920 WP_128039635.1 197231..197974(-) (comB8) [Helicobacter pylori strain GCT 27]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGCTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAGGTGTGGCAACGCTTTGAGGATTTGATTAAAACCCAAAACAGCATCTAT
GCACAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAGATCGTATTGAGTTATCTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCACCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment