Detailed information NTG0421702

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: G3M67_RS00930
• Genome accession: NZ_CP048601
• Coordinates: 198100..199155 (-)
• Length: 351 a.a.
• NCBI ID: WP_163525587.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 27
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 193100..204155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M67_RS00905 (G3M67_00905)	-	193583..194995 (-)	1413	WP_163524293.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
G3M67_RS00910 (G3M67_00910)	comB10	195065..196201 (-)	1137	WP_021173411.1	DNA type IV secretion system protein ComB10	Machinery gene
G3M67_RS00915 (G3M67_00915)	comB9	196194..197231 (-)	1038	WP_163524294.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
G3M67_RS00920 (G3M67_00920)	comB8	197231..197974 (-)	744	WP_128039635.1	virB8 family protein	Machinery gene
G3M67_RS00925 (G3M67_00925)	comB7	197971..198084 (-)	114	WP_001217875.1	hypothetical protein	Machinery gene
G3M67_RS00930 (G3M67_00930)	comB6	198100..199155 (-)	1056	WP_163525587.1	P-type conjugative transfer protein TrbL	Machinery gene
G3M67_RS00935 (G3M67_00935)	-	199163..200167 (-)	1005	WP_163525588.1	PDZ domain-containing protein	-
G3M67_RS00940 (G3M67_00940)	-	200167..200469 (-)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
G3M67_RS00945 (G3M67_00945)	panD	200472..200825 (-)	354	WP_097705594.1	aspartate 1-decarboxylase	-
G3M67_RS00950 (G3M67_00950)	-	200815..203043 (-)	2229	WP_001978629.1	ATP-dependent Clp protease ATP-binding subunit	-
G3M67_RS00955 (G3M67_00955)	-	203043..203318 (-)	276	WP_000781795.1	ATP-dependent Clp protease adaptor ClpS	-
G3M67_RS00960 (G3M67_00960)	-	203320..203733 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39704.58 Da
• Isoelectric Point: 8.8283

>NTDB_id=421702 G3M67_RS00930 WP_163525587.1 198100..199155(-) (comB6) [Helicobacter pylori strain GCT 27]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQVLFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKNWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSAFQSLQHATTSPALSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=421702 G3M67_RS00930 WP_163525587.1 198100..199155(-) (comB6) [Helicobacter pylori strain GCT 27]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTTTTCAGTGCTAGTGCGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TCATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGTGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAAACTGGAGGAGCGTTGTGATTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATAGACGCTAGCATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGCTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTCCAATCTTTACAGCATGCCA
CAACCTCGCCCGCTCTTTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	92.023	100	0.92