Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G3M68_RS02915 Genome accession   NZ_CP048600
Coordinates   628961..629761 (-) Length   266 a.a.
NCBI ID   WP_163497881.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 623961..634761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS02890 (G3M68_02890) - 625485..626366 (+) 882 WP_163497876.1 RluA family pseudouridine synthase -
  G3M68_RS02895 (G3M68_02895) - 626466..627026 (-) 561 WP_163497877.1 hypothetical protein -
  G3M68_RS02900 (G3M68_02900) - 627010..627348 (-) 339 WP_163497878.1 hypothetical protein -
  G3M68_RS02905 (G3M68_02905) - 627536..628327 (-) 792 WP_163497879.1 tetratricopeptide repeat protein -
  G3M68_RS02910 (G3M68_02910) dprB 628560..628964 (-) 405 WP_163497880.1 Holliday junction resolvase RuvX Machinery gene
  G3M68_RS02915 (G3M68_02915) dprA 628961..629761 (-) 801 WP_163497881.1 DNA-processing protein DprA Machinery gene
  G3M68_RS02920 (G3M68_02920) minE 629773..630006 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  G3M68_RS02925 (G3M68_02925) minD 630003..630809 (-) 807 WP_163497882.1 septum site-determining protein MinD -
  G3M68_RS02930 (G3M68_02930) ilvC 630833..631825 (-) 993 WP_163497883.1 ketol-acid reductoisomerase -
  G3M68_RS02940 (G3M68_02940) - 632074..632856 (+) 783 WP_163497884.1 NAD+ synthase -
  G3M68_RS02945 (G3M68_02945) - 632853..633791 (+) 939 WP_097702498.1 tetraacyldisaccharide 4'-kinase -
  G3M68_RS02950 (G3M68_02950) pseH 633724..634266 (-) 543 WP_000742722.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29858.77 Da        Isoelectric Point: 7.7769

>NTDB_id=421684 G3M68_RS02915 WP_163497881.1 628961..629761(-) (dprA) [Helicobacter pylori strain GCT 43]
MKSNFQYSALENIPEAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPTTIMLSPCSLDFIYPTNNHKVIQEIAQKGLILSEYEKDFMPIKGSFLARNRLVIALSDVVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=421684 G3M68_RS02915 WP_163497881.1 628961..629761(-) (dprA) [Helicobacter pylori strain GCT 43]
ATGAAAAGCAATTTCCAATACAGCGCGCTAGAAAATATCCCTGAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACGATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAACAACGATCATGCTTTCGCCTTGCAGTTTGGATTTCATCTATCCTACAAA
CAACCATAAAGTGATCCAAGAAATCGCACAAAAGGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGTAGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCTAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAAATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.617

100

0.966
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.788

84.962

0.406

Multiple sequence alignment