Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   G3M68_RS02910 Genome accession   NZ_CP048600
Coordinates   628560..628964 (-) Length   134 a.a.
NCBI ID   WP_163497880.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 623560..633964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS02885 (G3M68_02885) recJ 623935..625485 (+) 1551 WP_163497875.1 single-stranded-DNA-specific exonuclease RecJ -
  G3M68_RS02890 (G3M68_02890) - 625485..626366 (+) 882 WP_163497876.1 RluA family pseudouridine synthase -
  G3M68_RS02895 (G3M68_02895) - 626466..627026 (-) 561 WP_163497877.1 hypothetical protein -
  G3M68_RS02900 (G3M68_02900) - 627010..627348 (-) 339 WP_163497878.1 hypothetical protein -
  G3M68_RS02905 (G3M68_02905) - 627536..628327 (-) 792 WP_163497879.1 tetratricopeptide repeat protein -
  G3M68_RS02910 (G3M68_02910) dprB 628560..628964 (-) 405 WP_163497880.1 Holliday junction resolvase RuvX Machinery gene
  G3M68_RS02915 (G3M68_02915) dprA 628961..629761 (-) 801 WP_163497881.1 DNA-processing protein DprA Machinery gene
  G3M68_RS02920 (G3M68_02920) minE 629773..630006 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  G3M68_RS02925 (G3M68_02925) minD 630003..630809 (-) 807 WP_163497882.1 septum site-determining protein MinD -
  G3M68_RS02930 (G3M68_02930) ilvC 630833..631825 (-) 993 WP_163497883.1 ketol-acid reductoisomerase -
  G3M68_RS02940 (G3M68_02940) - 632074..632856 (+) 783 WP_163497884.1 NAD+ synthase -
  G3M68_RS02945 (G3M68_02945) - 632853..633791 (+) 939 WP_097702498.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15223.75 Da        Isoelectric Point: 9.5327

>NTDB_id=421683 G3M68_RS02910 WP_163497880.1 628560..628964(-) (dprB) [Helicobacter pylori strain GCT 43]
MILACDVGLKRIGIAALLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACKILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=421683 G3M68_RS02910 WP_163497880.1 628560..628964(-) (dprB) [Helicobacter pylori strain GCT 43]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTGTCTTGCCCTTAGAAGC
GATTTTACGCCATAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAATAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAAGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment