Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACIFE_RS13725 Genome accession   NC_015942
Coordinates   2825255..2826613 (-) Length   452 a.a.
NCBI ID   WP_014030176.1    Uniprot ID   G0JT27
Organism   Acidithiobacillus ferrivorans SS3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2820255..2831613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFE_RS13695 (Acife_2853) - 2820711..2821424 (-) 714 WP_014030170.1 hypothetical protein -
  ACIFE_RS13700 (Acife_2854) - 2821532..2821852 (-) 321 WP_014030171.1 hypothetical protein -
  ACIFE_RS13705 (Acife_2855) - 2821942..2822952 (-) 1011 WP_014030172.1 class 1 fructose-bisphosphatase -
  ACIFE_RS13710 (Acife_2856) - 2822986..2823738 (-) 753 WP_014030173.1 cell division protein ZapD -
  ACIFE_RS13715 (Acife_2857) coaE 2823855..2824457 (-) 603 WP_014030174.1 dephospho-CoA kinase -
  ACIFE_RS13720 (Acife_2858) - 2824458..2825258 (-) 801 WP_041649997.1 prepilin peptidase -
  ACIFE_RS13725 (Acife_2859) pilR 2825255..2826613 (-) 1359 WP_014030176.1 sigma-54-dependent transcriptional regulator Regulator
  ACIFE_RS13730 (Acife_2860) - 2826610..2828208 (-) 1599 WP_014030177.1 two-component system sensor histidine kinase NtrB -
  ACIFE_RS13735 (Acife_2861) pilB 2828332..2830041 (-) 1710 WP_014030178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACIFE_RS13740 (Acife_2862) aroE 2830011..2830910 (-) 900 WP_014030179.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48233.51 Da        Isoelectric Point: 5.3384

>NTDB_id=42133 ACIFE_RS13725 WP_014030176.1 2825255..2826613(-) (pilR) [Acidithiobacillus ferrivorans SS3]
MMADFSVLPPALIVDDEPNIVELLGITLQGMGIAVTGAYSLAEAFACLAEGAPSLCLSDLRLPDGSGIDLVRRLHVLHPQ
VPVAVITAYSSADGAVEAMQAGAFDYMAKPIELTRLRRLISQAVDLARLSPVGSDGTQRLVGDSPVMRRLRDDIRRVARS
NAPVHITGESGTGKELAARAIHASGVRHDKPFVAVNCGAIPEGLVESELFGAEKGAYSGAVQRREGLFVAANGGTIFLDE
IGELPMMVQVKLLRAIQERSIRPLGAAREIPLDLRFISATHRDLQEMVVAGNFRRDLLYRLDVVRLQMPPLREHPEDIPQ
LAEVILQRIGGGQPGVPTRLPAGTLARLGGYAFPGNVRELENLLERRLALQRDDILPEEELTSSGSMASESSVPAAVSAS
VAATGLDAAEAALLRQMLGLAGGDRHHAADLLGVSVQSLELRLSRLSLEAIA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=42133 ACIFE_RS13725 WP_014030176.1 2825255..2826613(-) (pilR) [Acidithiobacillus ferrivorans SS3]
ATGATGGCCGATTTTTCCGTGTTGCCACCTGCCCTGATCGTGGATGATGAGCCGAACATTGTTGAATTGTTGGGTATTAC
GCTGCAAGGTATGGGAATTGCCGTCACGGGTGCCTATTCCCTCGCAGAGGCCTTCGCCTGCCTCGCCGAAGGTGCCCCCT
CTTTATGTTTGAGCGATCTGCGGTTACCGGATGGTTCGGGTATTGATTTGGTACGTCGTCTACACGTGTTGCATCCGCAA
GTGCCGGTCGCCGTGATTACGGCCTACTCCTCCGCCGATGGCGCCGTCGAGGCGATGCAGGCCGGGGCCTTTGATTACAT
GGCTAAGCCCATCGAACTTACGCGTCTGCGGCGACTGATATCGCAAGCGGTTGATCTCGCTCGCCTGTCACCGGTGGGTT
CGGACGGTACGCAAAGGCTCGTGGGCGATTCTCCGGTGATGCGGCGCTTACGCGACGATATCCGCCGTGTTGCGCGAAGT
AATGCGCCAGTGCACATTACCGGTGAGTCTGGTACTGGTAAGGAGTTGGCAGCGCGTGCGATCCACGCCTCGGGGGTCCG
TCACGACAAGCCTTTCGTGGCAGTCAACTGTGGCGCCATTCCCGAGGGACTGGTAGAAAGTGAGCTCTTTGGTGCCGAGA
AGGGGGCTTACTCCGGTGCTGTACAGCGCCGCGAGGGGCTCTTTGTGGCGGCCAATGGCGGCACCATTTTCCTGGATGAG
ATTGGTGAACTACCGATGATGGTGCAGGTTAAGCTCCTGCGCGCCATTCAGGAGCGCAGCATTCGTCCGTTGGGTGCAGC
GCGGGAAATTCCCCTGGATCTGCGTTTCATCTCCGCTACCCACCGCGATTTGCAAGAGATGGTTGTTGCCGGTAACTTTC
GTCGGGATCTTCTGTATCGGCTGGATGTCGTACGGCTCCAAATGCCTCCTTTGCGCGAGCATCCGGAGGACATTCCGCAA
TTGGCAGAGGTGATTCTGCAACGTATCGGGGGCGGGCAGCCTGGTGTGCCGACGCGGCTGCCCGCAGGGACTCTTGCGCG
ATTGGGTGGTTACGCCTTCCCCGGCAATGTTCGCGAGCTGGAAAATTTGCTGGAGCGTCGTCTCGCGTTACAGCGGGACG
ATATTCTGCCCGAAGAAGAACTTACATCCTCTGGCAGCATGGCGTCCGAAAGCAGCGTGCCTGCCGCTGTATCGGCAAGT
GTTGCCGCGACTGGGTTAGACGCGGCCGAGGCAGCATTGCTGCGCCAGATGCTGGGGCTGGCCGGAGGCGACCGGCATCA
TGCCGCAGATCTGCTGGGTGTCAGTGTGCAGTCGCTGGAACTGCGACTCAGCAGATTGTCTCTGGAAGCAATTGCATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0JT27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

49.206

97.566

0.48
  pilR Acinetobacter baumannii strain A118

40.043

100

0.409

Multiple sequence alignment