Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GZ067_RS08015 Genome accession   NZ_CP048431
Coordinates   1609152..1609655 (-) Length   167 a.a.
NCBI ID   WP_106669570.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA1428     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1604152..1614655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ067_RS07975 (GZ067_07980) - 1604207..1604470 (+) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  GZ067_RS07980 (GZ067_07985) - 1604608..1605180 (-) 573 WP_000769722.1 PepSY domain-containing protein -
  GZ067_RS07985 (GZ067_07990) - 1605361..1605729 (-) 369 WP_000849163.1 YxeA family protein -
  GZ067_RS07990 (GZ067_07995) selX 1606098..1606709 (-) 612 WP_000473143.1 staphylococcal enterotoxin-like toxin X -
  GZ067_RS13905 - 1606915..1607615 (+) 701 Protein_1537 tyrosine-type recombinase/integrase -
  GZ067_RS08005 (GZ067_08010) - 1607654..1608592 (+) 939 WP_001817700.1 Abi family protein -
  GZ067_RS08010 (GZ067_08015) rpsR 1608858..1609100 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  GZ067_RS08015 (GZ067_08020) ssbA 1609152..1609655 (-) 504 WP_106669570.1 single-stranded DNA-binding protein Machinery gene
  GZ067_RS08020 (GZ067_08025) rpsF 1609676..1609972 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  GZ067_RS08025 (GZ067_08030) - 1610216..1610407 (+) 192 WP_001052483.1 hypothetical protein -
  GZ067_RS08030 (GZ067_08035) ychF 1610493..1611590 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  GZ067_RS08035 (GZ067_08040) - 1611602..1611805 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  GZ067_RS08040 (GZ067_08045) - 1611835..1612716 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  GZ067_RS08045 (GZ067_08050) - 1612873..1613718 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18553.14 Da        Isoelectric Point: 4.7305

>NTDB_id=421309 GZ067_RS08015 WP_106669570.1 1609152..1609655(-) (ssbA) [Staphylococcus aureus strain SA1428]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGIDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=421309 GZ067_RS08015 WP_106669570.1 1609152..1609655(-) (ssbA) [Staphylococcus aureus strain SA1428]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTATAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

63.473

0.365

Multiple sequence alignment