Detailed information NTG0421174

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GYM54_RS20970
• Genome accession: NZ_CP048411
• Coordinates: 4548299..4550524 (+)
• Length: 741 a.a.
• NCBI ID: WP_197444518.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MTM4
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4543299..4555524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GYM54_RS20945 (GYM54_20915)	-	4543533..4544105 (-)	573	WP_131648201.1	PilZ domain-containing protein	-
GYM54_RS20950 (GYM54_20920)	-	4544205..4545452 (+)	1248	WP_197444516.1	lipoprotein-releasing ABC transporter permease subunit	-
GYM54_RS20955 (GYM54_20925)	lolD	4545460..4546158 (+)	699	WP_131648948.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
GYM54_RS20960 (GYM54_20930)	-	4546158..4547405 (+)	1248	WP_197444517.1	lipoprotein-releasing ABC transporter permease subunit	-
GYM54_RS20965 (GYM54_20935)	-	4547607..4548122 (-)	516	WP_131648204.1	DUF2062 domain-containing protein	-
GYM54_RS20970 (GYM54_20940)	comA	4548299..4550524 (+)	2226	WP_197444518.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GYM54_RS20975 (GYM54_20945)	exbB	4550596..4551228 (+)	633	WP_131648205.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GYM54_RS20980 (GYM54_20950)	-	4551225..4551653 (+)	429	WP_131648206.1	biopolymer transporter ExbD	-
GYM54_RS20985 (GYM54_20955)	lpxK	4551653..4552657 (+)	1005	WP_181102722.1	tetraacyldisaccharide 4'-kinase	-
GYM54_RS20990 (GYM54_20960)	-	4552699..4552884 (+)	186	WP_131648208.1	Trm112 family protein	-
GYM54_RS20995 (GYM54_20965)	kdsB	4552881..4553645 (+)	765	WP_131648209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GYM54_RS21000 (GYM54_20970)	-	4553648..4554112 (+)	465	WP_181102720.1	low molecular weight protein-tyrosine-phosphatase	-
GYM54_RS21005 (GYM54_20975)	murB	4554109..4555128 (+)	1020	WP_181102718.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 81272.98 Da
• Isoelectric Point: 7.7804

>NTDB_id=421174 GYM54_RS20970 WP_197444518.1 4548299..4550524(+) (comA) [Pseudomonas sp. MTM4]
MRAAMLALAAGLLLLRFLPQLPPMWALPLIFITGLALLPLRVWPGAFFCFGFGWACLSAHWALDDRLPVDLDGRTFWMEG
RVTGLPDISDGVVRFELVDISSRHAGLPSRVRLAWYGGPTLQAGERWRLAAKLKRPRGLVNPNSFDYEAWLLAQRIGASG
TIKAGERVPLAQGNQSWRDRLRQRLLAVDAQGRSGAIAALVVGDDSGLSTSDWRILQDTGTVHLMVISGQHVGMLAGLLY
GLVALMARWGIWPPRVAWLPWACGFALVGALGYGWLAGFEVPVQRACMMVALVLLWRLRFRHLGVWLPLLIALDGVLLLD
PLVSLQPGFWLSFLAVTLLVLIFRGRLGSWVWWRALGRAQWGMAFGLLPVLLALGLPVSLSGPIANLFAVPLVSALIVPL
SLLGTSLLWLPDVGELLLWLAGGLLAFLFDALQWLAGWQPAWLSTSLPLWSWLLVALGMLLILSPSGVPFRALGWVFFAP
LLFPPTNEPAVGQAEVWVFDVGQGLAVLVRTRKHALLYDAGPRYGDFDIGERVVFPSLRALGLADLDLLILSHADSDHSG
GAEAIQRLLPAARVLSGEPERLPATLGAEWCRSGDRWEWDQVSFTLWQWPESKNSNQSSCVLLVEAAGERLLLTGDIDAA
AEQALIASDMPLEVRWLLVPHHGSRSSSSAAFIEAASAEGALVSRSLHNAFGHPHPDVVQRLQASNTQLYDTAEQGAIRI
LLGRFESAQGLRAERRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=421174 GYM54_RS20970 WP_197444518.1 4548299..4550524(+) (comA) [Pseudomonas sp. MTM4]
ATGCGTGCAGCGATGCTGGCGCTGGCGGCAGGCCTCCTACTGCTGCGCTTTCTACCGCAGTTACCACCAATGTGGGCGCT
GCCCCTCATATTCATAACAGGCCTGGCATTGCTGCCGTTGCGCGTTTGGCCGGGCGCTTTTTTCTGCTTTGGGTTTGGCT
GGGCCTGCCTGAGTGCTCATTGGGCGCTGGATGATCGCTTGCCGGTAGACCTCGACGGGCGCACCTTCTGGATGGAAGGA
CGCGTTACCGGACTGCCGGACATCAGTGATGGCGTGGTGCGGTTCGAACTGGTGGATATTTCGTCGCGCCATGCCGGGCT
GCCTTCGCGGGTGCGGTTAGCCTGGTACGGTGGGCCGACATTGCAGGCTGGCGAGCGCTGGCGGCTCGCAGCCAAACTGA
AACGACCGCGTGGTCTGGTCAATCCGAACTCGTTCGATTACGAGGCCTGGCTTTTGGCGCAGCGGATCGGTGCCAGCGGC
ACGATCAAGGCCGGCGAGCGCGTGCCGCTCGCGCAAGGAAACCAGTCGTGGCGCGATCGGCTGCGCCAACGCTTGTTGGC
AGTCGATGCGCAGGGGCGCTCGGGCGCAATCGCAGCGCTGGTGGTTGGTGACGACAGTGGTTTGTCTACGTCCGACTGGC
GGATACTTCAAGACACCGGAACCGTGCATTTGATGGTGATCTCGGGACAGCATGTAGGGATGCTGGCCGGTCTGCTTTAT
GGCCTGGTCGCGCTGATGGCGCGCTGGGGTATCTGGCCACCACGGGTCGCCTGGCTACCTTGGGCGTGTGGCTTCGCTTT
GGTAGGTGCGCTTGGATACGGCTGGTTGGCGGGCTTCGAAGTGCCGGTGCAACGCGCTTGCATGATGGTCGCGCTGGTGC
TTCTGTGGCGCTTGCGCTTTCGACATCTCGGTGTCTGGCTGCCTCTGTTGATCGCGCTCGATGGTGTCCTGCTACTGGAT
CCGTTGGTAAGCCTGCAACCGGGGTTCTGGCTGTCGTTCCTGGCGGTGACATTACTCGTCCTGATTTTTCGTGGTCGGCT
CGGCAGCTGGGTCTGGTGGCGGGCGTTGGGTCGCGCTCAATGGGGTATGGCGTTCGGCTTGTTACCAGTATTGCTTGCGT
TGGGCTTGCCGGTAAGCCTGAGCGGTCCGATCGCCAATCTGTTTGCCGTGCCGCTGGTCAGTGCGCTGATCGTACCCTTG
TCATTATTAGGCACCTCGCTGTTGTGGCTACCGGATGTCGGCGAGCTGCTGCTATGGCTGGCTGGCGGACTGCTGGCGTT
TCTGTTCGATGCGCTGCAATGGCTCGCTGGGTGGCAACCGGCATGGCTGTCAACGTCCTTGCCGCTGTGGAGTTGGTTGC
TAGTTGCGCTGGGCATGCTGTTGATCTTGTCGCCTTCCGGAGTGCCGTTCCGGGCGCTGGGGTGGGTGTTCTTCGCGCCG
TTGCTATTCCCACCGACGAACGAACCCGCGGTGGGCCAAGCGGAAGTGTGGGTATTCGATGTCGGTCAGGGGCTGGCGGT
ACTTGTGCGTACGCGTAAGCATGCCTTGCTATATGACGCGGGGCCGCGTTACGGGGACTTCGATATCGGCGAGCGTGTTG
TGTTTCCTTCGCTAAGGGCGTTGGGGCTGGCCGATCTCGATCTGCTGATCCTCAGCCATGCTGATAGTGATCATTCGGGA
GGCGCCGAGGCAATTCAGCGATTGTTACCGGCAGCACGGGTACTTAGCGGCGAACCGGAGCGACTACCTGCTACGTTGGG
CGCCGAGTGGTGCCGTTCAGGAGATCGTTGGGAGTGGGATCAGGTCAGTTTCACGCTTTGGCAATGGCCAGAAAGCAAAA
ATAGCAACCAGTCTTCTTGCGTACTGTTGGTTGAAGCGGCTGGCGAGCGGCTGTTACTCACCGGGGACATCGATGCGGCA
GCGGAACAGGCGCTGATAGCGAGCGATATGCCACTCGAGGTGCGATGGCTGCTGGTGCCGCACCACGGTAGTCGCAGCTC
GTCTTCCGCAGCGTTCATCGAGGCGGCGAGTGCTGAGGGGGCGCTGGTCTCGCGCAGTCTTCACAATGCTTTCGGCCATC
CACACCCGGACGTCGTGCAGCGTCTGCAAGCATCCAATACGCAGCTTTACGACACCGCCGAGCAGGGTGCCATACGAATC
CTTCTTGGACGTTTCGAATCCGCGCAGGGATTGCGCGCCGAACGGCGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (501-683)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Competence protein (Competence) (200-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	72.779	95.682	0.696
comA	Ralstonia pseudosolanacearum GMI1000	36.275	100	0.399