Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GYM54_RS20975 Genome accession   NZ_CP048411
Coordinates   4550596..4551228 (+) Length   210 a.a.
NCBI ID   WP_131648205.1    Uniprot ID   -
Organism   Pseudomonas sp. MTM4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4545596..4556228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM54_RS20960 (GYM54_20930) - 4546158..4547405 (+) 1248 WP_197444517.1 lipoprotein-releasing ABC transporter permease subunit -
  GYM54_RS20965 (GYM54_20935) - 4547607..4548122 (-) 516 WP_131648204.1 DUF2062 domain-containing protein -
  GYM54_RS20970 (GYM54_20940) comA 4548299..4550524 (+) 2226 WP_197444518.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GYM54_RS20975 (GYM54_20945) exbB 4550596..4551228 (+) 633 WP_131648205.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GYM54_RS20980 (GYM54_20950) - 4551225..4551653 (+) 429 WP_131648206.1 biopolymer transporter ExbD -
  GYM54_RS20985 (GYM54_20955) lpxK 4551653..4552657 (+) 1005 WP_181102722.1 tetraacyldisaccharide 4'-kinase -
  GYM54_RS20990 (GYM54_20960) - 4552699..4552884 (+) 186 WP_131648208.1 Trm112 family protein -
  GYM54_RS20995 (GYM54_20965) kdsB 4552881..4553645 (+) 765 WP_131648209.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GYM54_RS21000 (GYM54_20970) - 4553648..4554112 (+) 465 WP_181102720.1 low molecular weight protein-tyrosine-phosphatase -
  GYM54_RS21005 (GYM54_20975) murB 4554109..4555128 (+) 1020 WP_181102718.1 UDP-N-acetylmuramate dehydrogenase -
  GYM54_RS21010 (GYM54_20980) fdxA 4555232..4555555 (-) 324 WP_014851990.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22696.98 Da        Isoelectric Point: 7.9111

>NTDB_id=421175 GYM54_RS20975 WP_131648205.1 4550596..4551228(+) (exbB) [Pseudomonas sp. MTM4]
MWELVKAGGWIMLPIIFCSIAAAGIVAERLWTLRPARVTPPHLLGQVWKWIKDKKLSNQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSAFMGSGMANAPLLAAGISKALITTAA
GLMVGIPALFFHRFLLRRVEELVVGMEQEAIKLVEVVQGDRDVDLGEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=421175 GYM54_RS20975 WP_131648205.1 4550596..4551228(+) (exbB) [Pseudomonas sp. MTM4]
GTGTGGGAGCTGGTTAAAGCGGGCGGCTGGATAATGCTGCCAATCATTTTCTGTTCCATCGCTGCCGCTGGTATCGTCGC
CGAAAGGCTGTGGACGCTACGGCCTGCTCGCGTGACCCCGCCGCATCTGCTCGGCCAGGTGTGGAAATGGATCAAGGACA
AGAAGCTCAGTAATCAGAAGCTCAAGGAGTTGCGCGCCGATTCGCCGCTAGGCGAGATTCTGGCAGCAGGCCTGGCCAAC
TCAAAACATGGCCGGGAGATCATGAAAGAGTGCATCGAGGAGGCTGCGGCGCGTGTCGTCCATGACCTTGAGCGTTACCT
CAATGCACTGGGCACCATCGCCGGGATCGCGCCACTGCTCGGGTTGCTGGGTACAGTGCTTGGGATGATCGAGATTTTCA
GTGCCTTCATGGGCTCCGGCATGGCCAACGCACCGTTGCTCGCAGCGGGCATTTCCAAGGCGTTGATCACCACTGCAGCA
GGTCTGATGGTCGGCATCCCGGCATTGTTTTTCCATCGTTTCCTGCTACGCCGCGTCGAAGAACTGGTGGTCGGTATGGA
GCAGGAAGCGATCAAGCTGGTCGAGGTCGTACAGGGTGACCGTGACGTCGATCTGGGTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

95.714

100

0.957

Multiple sequence alignment