Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GZH78_RS25555 Genome accession   NZ_CP048408
Coordinates   5694867..5696213 (+) Length   448 a.a.
NCBI ID   WP_163976505.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5689867..5701213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS25530 (GZH78_25540) pgeF 5690082..5690804 (-) 723 WP_103385452.1 peptidoglycan editing factor PgeF -
  GZH78_RS25535 (GZH78_25545) rluD 5690801..5691763 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GZH78_RS25540 (GZH78_25550) - 5691916..5692932 (+) 1017 WP_007959566.1 outer membrane protein assembly factor BamD -
  GZH78_RS25545 (GZH78_25555) - 5693058..5693291 (+) 234 WP_039771683.1 PP0621 family protein -
  GZH78_RS25550 (GZH78_25560) pilS 5693281..5694870 (+) 1590 WP_163976903.1 ATP-binding protein Regulator
  GZH78_RS25555 (GZH78_25565) pilR 5694867..5696213 (+) 1347 WP_163976505.1 sigma-54 dependent transcriptional regulator Regulator
  GZH78_RS25560 (GZH78_25570) thiO 5696273..5697373 (-) 1101 WP_163976506.1 glycine oxidase ThiO -
  GZH78_RS25565 (GZH78_25575) - 5697431..5697832 (-) 402 WP_085668039.1 type IV pilin protein -
  GZH78_RS25570 (GZH78_25580) - 5697848..5700940 (-) 3093 WP_163976508.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50047.38 Da        Isoelectric Point: 6.6657

>NTDB_id=421124 GZH78_RS25555 WP_163976505.1 5694867..5696213(+) (pilR) [Pseudomonas fluorescens strain DR397]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLHRETFDLCLTDMRLPDGTGLELVQHVQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGSALRMPAPGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLPMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERREDIEALA
GHMLKRLAIGTGQPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNGTAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=421124 GZH78_RS25555 WP_163976505.1 5694867..5696213(+) (pilR) [Pseudomonas fluorescens strain DR397]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAATCTCGCAGAAGCCCAGGCGCTGCTGCACCGCGAAACCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACGTTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTGACGCGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGCCGGGTAATGTCTGCACTTCGA
TCGACCGGCGGTTGCTCGGCGACTCACCACCGATGCGCAATCTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCG
CCGGTCTACATCAGCGGCGAGTCCGGCAGTGGCAAGGAGCTGGTGGCCCGATTGATTCATGAGCAGGGCCCGCGCGCCAG
CCAGCCGTTCGTGCCGGTGAACTGCGGGGCGATTCCTTCGGAGTTGATGGAGAGCGAGTTCTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCGGTGGAGGATAAGCCGGGGCTGTTTCAGGCGGCCCATGGCGGCACGCTGTTTCTCGATGAAGTGGCG
GATCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGGCAACAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCGACGCACAAGGACCTCGACGCGGAAGTGGCTGCCGAGCGCTTTCGTCAGG
ATCTGTATTACCGGTTGAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAACGTCGCGAGGACATCGAAGCACTGGCC
GGCCACATGCTCAAGCGCCTGGCCATTGGCACCGGGCAGCCGGCGGCACGTCTTCATCCCCATGCCCTCGAGGCGCTGAA
AAACTACCGGTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTTGAGCGGGCACATACCCTGTGTGAAAACCGCACGA
TCGAGGCAGAGGATTTACGTCTGAGTGAAGGAAACGGCACTGCTGAAGGCGGCATTGCCGATCTCACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAGCGTCGAGCGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTACAGGCTCAAGAAGCTCGGGCTGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.684

98.884

0.788
  pilR Acinetobacter baumannii strain A118

48.584

100

0.498

Multiple sequence alignment