Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | GZH78_RS25450 | Genome accession | NZ_CP048408 |
| Coordinates | 5678658..5679530 (+) | Length | 290 a.a. |
| NCBI ID | WP_074691471.1 | Uniprot ID | - |
| Organism | Pseudomonas fluorescens strain DR397 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5673658..5684530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZH78_RS25425 (GZH78_25435) | - | 5673961..5674257 (+) | 297 | WP_039771652.1 | DUF2845 domain-containing protein | - |
| GZH78_RS25430 (GZH78_25440) | - | 5674425..5674781 (-) | 357 | WP_011335977.1 | BON domain-containing protein | - |
| GZH78_RS25435 (GZH78_25445) | - | 5675078..5675509 (-) | 432 | WP_039771655.1 | pilin | - |
| GZH78_RS25440 (GZH78_25450) | pilB | 5675736..5677436 (+) | 1701 | WP_163976499.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GZH78_RS25445 (GZH78_25455) | pilC | 5677439..5678656 (+) | 1218 | WP_134333457.1 | type II secretion system F family protein | Machinery gene |
| GZH78_RS25450 (GZH78_25460) | pilD | 5678658..5679530 (+) | 873 | WP_074691471.1 | A24 family peptidase | Machinery gene |
| GZH78_RS25455 (GZH78_25465) | coaE | 5679527..5680150 (+) | 624 | WP_074691472.1 | dephospho-CoA kinase | - |
| GZH78_RS25460 (GZH78_25470) | yacG | 5680147..5680347 (+) | 201 | WP_011335983.1 | DNA gyrase inhibitor YacG | - |
| GZH78_RS25465 (GZH78_25475) | - | 5680353..5680568 (-) | 216 | WP_007959584.1 | hypothetical protein | - |
| GZH78_RS25470 (GZH78_25480) | - | 5680634..5681323 (-) | 690 | WP_134333458.1 | energy-coupling factor ABC transporter permease | - |
| GZH78_RS25475 (GZH78_25485) | - | 5681457..5682083 (+) | 627 | WP_007959580.1 | DUF1780 domain-containing protein | - |
| GZH78_RS25480 (GZH78_25490) | - | 5682080..5682607 (+) | 528 | WP_039771669.1 | MOSC domain-containing protein | - |
| GZH78_RS25485 (GZH78_25495) | - | 5682659..5682832 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| GZH78_RS25490 (GZH78_25500) | - | 5682896..5684194 (+) | 1299 | WP_163976501.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32256.60 Da Isoelectric Point: 7.7029
>NTDB_id=421122 GZH78_RS25450 WP_074691471.1 5678658..5679530(+) (pilD) [Pseudomonas fluorescens strain DR397]
MPIDELLSLYPLAFVFAALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGESPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGRCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
MPIDELLSLYPLAFVFAALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGESPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYVFLRGRCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=421122 GZH78_RS25450 WP_074691471.1 5678658..5679530(+) (pilD) [Pseudomonas fluorescens strain DR397]
ATGCCTATCGACGAACTCCTCAGCCTGTATCCGCTGGCCTTTGTCTTCGCCGCGCTGCTGCTGGGGCTGGTGGTCGGCAG
CTTCCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTACTGGGCC
TGCCCGGTGAATCGCCATTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATTCCCGTGTTGAGTTACGTGTTCCTGCGCGGGCGCTGTTCAAGTTGCAGCGCACCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCTTGCGGCCTGCTCTCGGCATTCATTGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGTTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAACATCAATTGCTGCCTGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGCTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGCTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCCTCAGCCTGTATCCGCTGGCCTTTGTCTTCGCCGCGCTGCTGCTGGGGCTGGTGGTCGGCAG
CTTCCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCTCACGATGTACTGGGCC
TGCCCGGTGAATCGCCATTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATCCGC
GCGTGGGAAAACATTCCCGTGTTGAGTTACGTGTTCCTGCGCGGGCGCTGTTCAAGTTGCAGCGCACCGATCAGCAAGCG
TTACCCGCTGACCGAACTGGCTTGCGGCCTGCTCTCGGCATTCATTGCCTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGTTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAACATCAATTGCTGCCTGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGCTGCACGACGCCCTGTGGGGCGCGGT
GCTGGGCTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTCTGCCGCTGACCATCCTCTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGCGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.128 |
97.241 |
0.507 |
| pilD | Vibrio campbellii strain DS40M4 |
51.418 |
97.241 |
0.5 |
| pilD | Acinetobacter baumannii D1279779 |
48.175 |
94.483 |
0.455 |
| pilD | Acinetobacter nosocomialis M2 |
47.445 |
94.483 |
0.448 |
| pilD | Neisseria gonorrhoeae MS11 |
47.778 |
93.103 |
0.445 |