Detailed information NTG0421117

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: GZH78_RS22185
• Genome accession: NZ_CP048408
• Coordinates: 4960382..4962625 (-)
• Length: 747 a.a.
• NCBI ID: WP_163976132.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain DR397
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4955382..4967625

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZH78_RS22150 (GZH78_22155)	murB	4955782..4956801 (-)	1020	WP_163976126.1	UDP-N-acetylmuramate dehydrogenase	-
GZH78_RS22155 (GZH78_22160)	-	4956798..4957262 (-)	465	WP_163976128.1	low molecular weight protein-tyrosine-phosphatase	-
GZH78_RS22160 (GZH78_22165)	kdsB	4957262..4958026 (-)	765	WP_074688122.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
GZH78_RS22165 (GZH78_22170)	-	4958023..4958208 (-)	186	WP_003179363.1	Trm112 family protein	-
GZH78_RS22170 (GZH78_22175)	lpxK	4958233..4959243 (-)	1011	WP_103386991.1	tetraacyldisaccharide 4'-kinase	-
GZH78_RS22175 (GZH78_22180)	-	4959243..4959671 (-)	429	WP_039770694.1	biopolymer transporter ExbD	-
GZH78_RS22180 (GZH78_22185)	exbB	4959668..4960303 (-)	636	WP_163976130.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
GZH78_RS22185 (GZH78_22190)	comA	4960382..4962625 (-)	2244	WP_163976132.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
GZH78_RS22190 (GZH78_22195)	-	4962762..4963280 (+)	519	WP_064598575.1	DUF2062 domain-containing protein	-
GZH78_RS22195 (GZH78_22200)	-	4963335..4964114 (-)	780	WP_007950763.1	ABC transporter permease	-
GZH78_RS22200 (GZH78_22205)	-	4964111..4965043 (-)	933	WP_039770736.1	ABC transporter ATP-binding protein	-
GZH78_RS22205 (GZH78_22210)	-	4965177..4965800 (-)	624	WP_103386993.1	glutathione S-transferase	-
GZH78_RS22210 (GZH78_22215)	-	4965844..4966503 (-)	660	WP_039770701.1	transglutaminase family protein	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 82004.11 Da
• Isoelectric Point: 10.2233

>NTDB_id=421117 GZH78_RS22185 WP_163976132.1 4960382..4962625(-) (comA) [Pseudomonas fluorescens strain DR397]
MRTGMMALAVGLLAAVFLPALPPVGLLLVLPWVALMLLPFRSYPLAFLLLGFTWAGFNAQMALNDRLPSRLDGETRWVEG
RVVGLPQNAEGVVRFELADARSRHDKLPSLMRLAWYAGPEVSSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARFGFWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVRRACVMVVLVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGFWLSFVAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLLALSLPISLSGPLANLLAVPWVSFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIDGLFRALALIAGRWPAWVAQSMPGWIVALGCIGAVLLLLPRGVPLRPLGWPLLLVLA
FPPRERLTEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALRKLGVEHLDLMLLSHADADHAGGA
LAVAKGLPVSRVISGDPQGLAVALNAEACESGRQWQWDGVAFHLWQWAEAHDSNQRSCVLQIEANGERLLLTGDIDTNAE
RDLLNSALAVPTQWLQAPHHGSRSSSSMALLKVLQPQAVLISRGQGNSFGHPHPTVIARYRKQGIHIHDSAEQGAIHLQL
GRFEPARSMRQQRRFWRAPPLPGTEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=421117 GZH78_RS22185 WP_163976132.1 4960382..4962625(-) (comA) [Pseudomonas fluorescens strain DR397]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGCAGCGGTTTTTTTACCGGCCCTACCGCCGGTCGGGTTATT
GCTGGTGTTGCCGTGGGTGGCGCTGATGCTGCTGCCGTTTCGCAGCTATCCACTGGCGTTTTTGCTGCTTGGATTTACAT
GGGCGGGTTTCAACGCGCAGATGGCGTTGAATGATCGACTGCCTTCCCGGCTGGATGGCGAAACGCGCTGGGTGGAAGGG
CGGGTCGTCGGCTTGCCGCAGAACGCCGAGGGCGTCGTGCGCTTCGAACTGGCCGATGCGCGCTCGCGTCACGACAAACT
GCCATCGCTGATGCGTCTGGCCTGGTACGCCGGGCCTGAGGTCAGCAGTGGCGAACGCTGGCGACTGGCGGTCAAGCTCA
AGCGTCCCGGTGGGCTGCTCAATCCGGATGCGTTTGATTACGAAGCCTGGCTGCTGGCGCAACGCATTGGTGCTACCGGG
ACGGTGAAGGATGGCCAGCGTCTGGCGCCGGCGCAGTGGGCCTGGCGCGACAGTATTCGCCAGCGCCTGCTTGCCGTTGA
CGCCCAGGGTCGTAACGGCGCCTTGGCCGCGTTGGTGCTCGGCGATGGTTCCGGCCTCAGTCGCGAAGACTGGCAAATCT
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGCCAGCACATCGGGCTGTTGGCAGCGTTGATGTACGCGCTG
GTCGCCGGGTTGGCGCGATTCGGATTTTGGCCGCTGCGTTGGCCCTGGCTGCCTTGGGCGTGCGGTCTGGCATTCACGGC
GGCGCTGGGTTACGGCCTGCTGGCCGGGTTCGATGTGCCGGTACGGCGGGCCTGCGTAATGGTTGTGCTGGTGTTGTTGT
GGCGTTTGCGCTTTCGCCATCTCGGTGCGTGGTGGCCGTTGCTGCTGGCCTTCAACGGCGTGTTGTTGATGGATCCGCTG
GCCAGTCTGCGTCCGGGATTTTGGCTGTCGTTCGTGGCCGTGGCCGTGTTGATCTTCACCTTCGGTGGCCGTTTGGGACC
GTGGCGCTGGTGGCAGACCTGGACACGCGCGCAGTGGCTGATCGCAATCGGATTGTGCCCGGTGCTGCTGGCGTTGAGTC
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGTGCCGTGGGTCAGTTTTGCGGTGCTGCCGCCGGCGTTG
CTCGGGACTTTGTTGCTGCCAATTCCTTATGTCGGTGAAGGGCTGCTGTGGCTGGCCGGTGGACTGATCGATGGATTGTT
CCGGGCACTGGCCCTGATTGCCGGGCGCTGGCCGGCGTGGGTTGCACAATCGATGCCGGGCTGGATCGTGGCGCTGGGTT
GCATCGGTGCAGTGCTGTTATTGCTGCCCCGAGGCGTTCCCCTGCGTCCCTTGGGCTGGCCGTTGCTGCTGGTGCTGGCA
TTTCCGCCTCGAGAACGCCTGACCGAAGGCGTAGCGGATGTGTGGCAACTGGATGTCGGCCAGGGTCTGGCAATTCTGAT
CCGCACCCGGCATCACACCTTGCTGTACGACAGCGGCCCGCGTTTCGGCGACTTTGACCTCGGCGAGCGAGTGGTGCTGC
CGGCATTGCGCAAATTGGGCGTGGAACACCTCGACCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCAGGTGGCGCA
CTCGCCGTAGCGAAAGGATTGCCGGTCAGCCGGGTCATCAGCGGCGATCCGCAGGGATTGGCCGTAGCGCTGAACGCCGA
AGCCTGTGAAAGCGGTCGGCAATGGCAGTGGGACGGCGTTGCCTTTCATCTATGGCAATGGGCAGAAGCCCATGACAGCA
ACCAGCGTTCCTGCGTGTTGCAGATCGAAGCCAACGGCGAGCGGCTGCTGCTGACCGGTGACATCGACACCAATGCCGAG
CGGGATTTGCTCAACAGCGCGCTGGCGGTTCCGACCCAGTGGCTGCAAGCCCCGCATCACGGCAGCCGCAGTTCCTCATC
GATGGCCTTGCTCAAGGTTTTGCAGCCCCAGGCCGTGCTGATTTCCCGAGGGCAGGGCAACTCGTTCGGCCATCCGCACC
CGACGGTCATTGCCCGTTACCGCAAGCAGGGAATACACATCCACGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGGCGGTTTGAGCCGGCCCGGTCGATGCGTCAACAACGCCGGTTCTGGCGCGCCCCGCCGTTGCCGGGGACGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.813	96.118	0.604
comA	Ralstonia pseudosolanacearum GMI1000	34.65	100	0.364