Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   GZH78_RS22180 Genome accession   NZ_CP048408
Coordinates   4959668..4960303 (-) Length   211 a.a.
NCBI ID   WP_163976130.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4954668..4965303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS22145 (GZH78_22150) - 4955064..4955534 (-) 471 WP_163976124.1 (2Fe-2S)-binding protein -
  GZH78_RS22150 (GZH78_22155) murB 4955782..4956801 (-) 1020 WP_163976126.1 UDP-N-acetylmuramate dehydrogenase -
  GZH78_RS22155 (GZH78_22160) - 4956798..4957262 (-) 465 WP_163976128.1 low molecular weight protein-tyrosine-phosphatase -
  GZH78_RS22160 (GZH78_22165) kdsB 4957262..4958026 (-) 765 WP_074688122.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GZH78_RS22165 (GZH78_22170) - 4958023..4958208 (-) 186 WP_003179363.1 Trm112 family protein -
  GZH78_RS22170 (GZH78_22175) lpxK 4958233..4959243 (-) 1011 WP_103386991.1 tetraacyldisaccharide 4'-kinase -
  GZH78_RS22175 (GZH78_22180) - 4959243..4959671 (-) 429 WP_039770694.1 biopolymer transporter ExbD -
  GZH78_RS22180 (GZH78_22185) exbB 4959668..4960303 (-) 636 WP_163976130.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  GZH78_RS22185 (GZH78_22190) comA 4960382..4962625 (-) 2244 WP_163976132.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GZH78_RS22190 (GZH78_22195) - 4962762..4963280 (+) 519 WP_064598575.1 DUF2062 domain-containing protein -
  GZH78_RS22195 (GZH78_22200) - 4963335..4964114 (-) 780 WP_007950763.1 ABC transporter permease -
  GZH78_RS22200 (GZH78_22205) - 4964111..4965043 (-) 933 WP_039770736.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.97 Da        Isoelectric Point: 7.3615

>NTDB_id=421116 GZH78_RS22180 WP_163976130.1 4959668..4960303(-) (exbB) [Pseudomonas fluorescens strain DR397]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=421116 GZH78_RS22180 WP_163976130.1 4959668..4960303(-) (exbB) [Pseudomonas fluorescens strain DR397]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATTTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATTGCCGCCATGTCGCCGTTGCTGGGTCTGCTGGGGACGGTGCTGGGCATGATCGACATTTTCA
GTGCCTTCACCGGTTCCGGCATGACCACCAATGCTGCGGTGCTGGCCGGCGGTATTTCCAAGGCTTTGATCACTACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment