Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   D39N_RS00865 Genome accession   NZ_CP061208
Coordinates   174619..175212 (+) Length   197 a.a.
NCBI ID   WP_000271489.1    Uniprot ID   Q8DRE8
Organism   Streptococcus pneumoniae strain D39_P0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 169619..180212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS00845 (D39N_00168) ribE 170802..171269 (-) 468 WP_001099502.1 6,7-dimethyl-8-ribityllumazine synthase -
  D39N_RS00850 (D39N_00169) - 171270..172475 (-) 1206 WP_000456640.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -
  D39N_RS00855 (D39N_00170) ribE 172495..173130 (-) 636 WP_000493842.1 riboflavin synthase -
  D39N_RS00860 (D39N_00171) ribD 173115..174215 (-) 1101 WP_001284101.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  D39N_RS00865 (D39N_00172) ruvA 174619..175212 (+) 594 WP_000271489.1 Holliday junction branch migration protein RuvA Machinery gene
  D39N_RS00870 (D39N_00173) - 175222..175785 (+) 564 WP_000166586.1 DNA-3-methyladenine glycosylase I -
  D39N_RS00875 (D39N_00174) - 175782..176459 (+) 678 WP_000987422.1 type II CAAX endopeptidase family protein -
  D39N_RS00880 (D39N_00175) - 176614..177645 (-) 1032 WP_000255098.1 S66 peptidase family protein -
  D39N_RS00885 (D39N_00176) - 177900..178583 (-) 684 WP_000078022.1 DUF1129 domain-containing protein -
  D39N_RS00890 (D39N_00177) - 178595..179539 (-) 945 WP_000815629.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21548.06 Da        Isoelectric Point: 7.3085

>NTDB_id=420915 D39N_RS00865 WP_000271489.1 174619..175212(+) (ruvA) [Streptococcus pneumoniae strain D39_P0]
MYAYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDGLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=420915 D39N_RS00865 WP_000271489.1 174619..175212(+) (ruvA) [Streptococcus pneumoniae strain D39_P0]
ATGTACGCATATTTAAAAGGAATCATTACCAAAATTACTGCCAAATACATTGTTCTTGAAACCAATGGTATTGGTTATAT
CCTGCATGTGGCCAATCCTTATGCCTATTCAGGTCAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATTTGCTTTATGGATTTCGCTCAGAGGATGAGAAAAAGCTCTTTCTTAGTCTAATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATTAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGGCCTTCCTGCCAAGGTCGCAGTGCAAGCAAGTGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCAACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAAATGTTGGTCAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

100

100

1
  ruvA Streptococcus pneumoniae D39

100

100

1
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.806

100

0.416