Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IB283_RS16390 Genome accession   NZ_CP061185
Coordinates   3496449..3497186 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain LD67-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3491449..3502186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB283_RS16375 (IB283_16375) clpC 3491903..3494476 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IB283_RS16380 (IB283_16380) yfiH 3494606..3495337 (-) 732 WP_000040134.1 purine nucleoside phosphorylase YfiH -
  IB283_RS16385 (IB283_16385) rluD 3495334..3496314 (-) 981 WP_022645998.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IB283_RS16390 (IB283_16390) comL 3496449..3497186 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IB283_RS16395 (IB283_16395) - 3497290..3498637 (+) 1348 Protein_3235 IS4-like element IS4 family transposase -
  IB283_RS16400 (IB283_16400) raiA 3498898..3499239 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IB283_RS16405 (IB283_16405) pheL 3499343..3499390 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IB283_RS16410 (IB283_16410) pheA 3499489..3500649 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  IB283_RS16415 (IB283_16415) tyrA 3500692..3501813 (-) 1122 WP_022646000.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=420783 IB283_RS16390 WP_000197686.1 3496449..3497186(+) (comL) [Escherichia coli strain LD67-1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=420783 IB283_RS16390 WP_000197686.1 3496449..3497186(+) (comL) [Escherichia coli strain LD67-1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATCTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTCAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGCCAATACACC
ACTGATGCAACCAAACGTCTGGTGTTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCAGAGTACTACACCGA
ACGTGGCGCATGGGTTGCCGTCGTCAACCGCGTCGAAGGCATGCTGCGTGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCTTACCGCCAGATGCAGATGAACGCTCAGGCTGAAAAAGTCGCAAAAATTATTGCCGCT
AACAGCAGCAACACTTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment