Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   GYN04_RS02335 Genome accession   NZ_CP048254
Coordinates   452945..453418 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447945..458418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS02310 (GYN04_02310) dnaB 448462..449865 (+) 1404 WP_012503477.1 replicative DNA helicase -
  GYN04_RS02315 (GYN04_02315) pilH 450122..450784 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GYN04_RS02320 (GYN04_02320) pilV 450816..451427 (+) 612 WP_250328389.1 type IV pilus modification protein PilV Machinery gene
  GYN04_RS02325 (GYN04_02325) pilJ 451424..452353 (+) 930 WP_250328390.1 PilW family protein Machinery gene
  GYN04_RS02330 (GYN04_02330) pilK 452332..452943 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  GYN04_RS02335 (GYN04_02335) pilL 452945..453418 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  GYN04_RS02340 (GYN04_02340) - 453488..453796 (-) 309 WP_025456241.1 AzlD family protein -
  GYN04_RS02345 (GYN04_02345) - 453793..454502 (-) 710 Protein_458 AzlC family ABC transporter permease -
  GYN04_RS02350 (GYN04_02350) dut 454668..455120 (+) 453 WP_003687923.1 dUTP diphosphatase -
  GYN04_RS02355 (GYN04_02355) dapC 455198..456385 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  GYN04_RS02360 (GYN04_02360) yaaA 456541..457320 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=420231 GYN04_RS02335 WP_012503482.1 452945..453418(+) (pilL) [Neisseria gonorrhoeae strain CT530]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=420231 GYN04_RS02335 WP_012503482.1 452945..453418(+) (pilL) [Neisseria gonorrhoeae strain CT530]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854

Multiple sequence alignment