Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SPPN_RS07370 Genome accession   NC_015875
Coordinates   1433123..1435081 (-) Length   652 a.a.
NCBI ID   WP_000748868.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1428123..1440081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS07355 (SPPN_07475) - 1429725..1430891 (-) 1167 WP_000521379.1 MalY/PatB family protein -
  SPPN_RS07360 (SPPN_07480) - 1430899..1431993 (-) 1095 WP_000031969.1 cystathionine gamma-synthase -
  SPPN_RS13980 - 1432121..1432279 (-) 159 WP_050208363.1 hypothetical protein -
  SPPN_RS07365 (SPPN_07485) - 1432354..1432809 (-) 456 WP_000500945.1 hypothetical protein -
  SPPN_RS07370 (SPPN_07490) amiA 1433123..1435081 (-) 1959 WP_000748868.1 peptide ABC transporter substrate-binding protein Regulator
  SPPN_RS07375 (SPPN_07495) - 1435287..1436909 (-) 1623 WP_000017788.1 putative polysaccharide biosynthesis protein -
  SPPN_RS07380 (SPPN_07500) - 1437015..1438460 (+) 1446 WP_000590270.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SPPN_RS07385 (SPPN_07505) - 1438505..1438702 (-) 198 WP_000051199.1 CsbD family protein -
  SPPN_RS07390 (SPPN_07510) - 1438802..1439451 (-) 650 Protein_1498 DUF1803 domain-containing protein -
  SPPN_RS07395 (SPPN_07515) - 1439435..1439947 (-) 513 WP_000892241.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72787.21 Da        Isoelectric Point: 4.9411

>NTDB_id=42006 SPPN_RS07370 WP_000748868.1 1433123..1435081(-) (amiA) [Streptococcus pseudopneumoniae IS7493]
MKKSKSKYLTLAGLVLGTGILLSACGNSSTGSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWSVSKDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLQYAADKKSEALYLVQDSVAGLDDYITGKTSDFSTVGV
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQTATSYYWNFNLDRQAYKFTSKTT
DIEKKSTQEAVLNKNFRQAINFAYDRTAYGAQTQGEDGATKILRNLVVPPTFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADGQDPYYNPEKAKTKFAEAKKELEAKGVQFPIHLDATVDQASKKGIQEVSSMKQSIEAALGTENVVIDIQQLSTEDYHN
SSYFAQTAAQKDYDLYNGGWGPDYLDPSTYLDIFSVKNGGVLQNLGLEPGEANDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYADIQAWLIDSSLAIPNVSLGGTPGLRKTVPFSAPYSLAGNKGVESFKYLKVQDKIVTTDEYAKAREKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=42006 SPPN_RS07370 WP_000748868.1 1433123..1435081(-) (amiA) [Streptococcus pseudopneumoniae IS7493]
ATGAAAAAGTCTAAGAGCAAATATCTAACCTTGGCAGGTCTTGTCCTGGGTACAGGAATTTTATTGAGCGCGTGTGGAAA
TTCTAGCACAGGATCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGCG
CAACAACAAATGATATTGTGACCAACCTGGTAGATGGTCTCATGGAAAATGACCAATATGGGAACTATGTGCCATCCTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTTCGTAAGGATGCCAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCTCCTGTAACTGCCCAAGATTTTGTGACAGGTTTGCAATATGCGGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTGGATGACTATATCACTGGTAAAACAAGCGACTTTTCAACTGTCGGTGTC
AAGGCTCTTGATGACCAAACGGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACGACATCAACCAT
TCTTTTCCCAGTCAATGCGGATTTCCTAAAATCAAAAGGGGATGATTTTGGCAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAG
AATGTCTTTGTAGATGATGTTAAATTGACCTACTATGATGGTAGTGACCAAGATGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTACGCTCGTCTCTATCCAAATAGTTCAAGTTTTGAAGGGATTAAAGAAAAATACAAAGATGATATCATCT
ACAGTATGCAGACTGCTACGTCTTATTACTGGAATTTTAACCTAGATAGACAAGCTTATAAATTTACTTCTAAGACGACC
GACATTGAAAAGAAATCAACTCAGGAAGCAGTTCTTAATAAAAACTTCCGTCAAGCTATTAACTTTGCCTATGATCGTAC
AGCCTATGGGGCTCAAACTCAGGGAGAAGACGGAGCGACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAACCTTTGTAA
GTATCAAGGGAAAAGACTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGTATCAACTTT
GCGGATGGTCAAGACCCTTATTACAATCCTGAGAAAGCCAAGACTAAATTTGCTGAGGCCAAGAAAGAGCTAGAAGCTAA
GGGAGTTCAATTCCCTATTCATTTGGATGCGACAGTTGACCAAGCTTCTAAGAAGGGGATTCAAGAAGTAAGCTCTATGA
AGCAATCTATTGAAGCAGCTTTAGGTACGGAGAACGTCGTTATTGATATCCAACAGTTATCAACAGAGGACTATCATAAC
TCAAGTTACTTTGCTCAAACAGCAGCTCAAAAAGATTATGACCTTTACAATGGTGGTTGGGGTCCTGACTACTTAGATCC
ATCAACCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAATCTTGGACTCGAGCCTGGTGAAGCCAACG
ACAAGGCTAAGGCAGTTGGACTTGACACTTATACTCAAATGTTGGAAGAGGCTAATAAGGAGCAAGACCCAGCCAAACGT
TATGAAAAATATGCTGATATTCAAGCATGGTTGATAGATAGTTCTCTAGCGATTCCAAATGTTTCATTGGGTGGAACACC
TGGCTTGAGAAAAACAGTTCCTTTCTCAGCACCTTATTCATTGGCTGGTAATAAAGGGGTCGAATCATTTAAGTACCTCA
AAGTACAAGATAAGATTGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.339

100

0.575
  amiA3 Streptococcus thermophilus LMG 18311

57.099

100

0.574
  amiA3 Streptococcus thermophilus LMD-9

57.099

100

0.574

Multiple sequence alignment