Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SPPN_RS05860 Genome accession   NC_015875
Coordinates   1131140..1131949 (-) Length   269 a.a.
NCBI ID   WP_001289495.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126140..1136949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS05840 (SPPN_05915) - 1127544..1128494 (-) 951 WP_000658131.1 Abi family protein -
  SPPN_RS05845 (SPPN_05920) - 1128604..1130475 (-) 1872 WP_000963214.1 Eco57I restriction-modification methylase domain-containing protein -
  SPPN_RS05850 (SPPN_05925) - 1130551..1130805 (-) 255 WP_014017264.1 type II toxin-antitoxin system RelE family toxin -
  SPPN_RS05855 (SPPN_05930) relB 1130807..1131049 (-) 243 WP_000208079.1 type II toxin-antitoxin system RelB family antitoxin -
  SPPN_RS05860 (SPPN_05935) vicX 1131140..1131949 (-) 810 WP_001289495.1 MBL fold metallo-hydrolase Regulator
  SPPN_RS05865 (SPPN_05940) micB 1131951..1133300 (-) 1350 WP_000886221.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SPPN_RS05870 (SPPN_05945) micA 1133293..1133997 (-) 705 WP_000722069.1 response regulator YycF Regulator
  SPPN_RS05875 (SPPN_05950) mutY 1134053..1135228 (-) 1176 WP_000886139.1 A/G-specific adenine glycosylase -
  SPPN_RS13190 - 1135274..1135444 (-) 171 WP_158083587.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29920.90 Da        Isoelectric Point: 6.1738

>NTDB_id=41998 SPPN_RS05860 WP_001289495.1 1131140..1131949(-) (vicX) [Streptococcus pseudopneumoniae IS7493]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=41998 SPPN_RS05860 WP_001289495.1 1131140..1131949(-) (vicX) [Streptococcus pseudopneumoniae IS7493]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCCTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTATCTGGTAAGAAAATTACCAGCCTACTTGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGACCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAGGCTATGGAAAATAGCAAGTATCTCGGTAAGGTAGACTCGTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTCAGCCATGATGCAGTCGCACCGC
AGTTTTATCGCTTTATGAAGGATGACAAGAGTTTTGTCATGCTGACTGATACAGGTTATGTTAGCGATCGTATGGCGGGA
ATTGTCGAAAATGCGGACGGCTATCTTATTGAGTCCAATCATGATGTAGAGATTTTGCGAGCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTCGGTCACCTTTCTAACGAAGACGGTGCTGAAGCTATGATTCGTACCTTGGGAA
ACCGCACTAAGAAAATCTACCTTGGGCATTTATCTAAGGAGAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTGGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCCTTGAC
GGACATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment