Detailed information NTG0419965

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IBG29_RS09000
• Genome accession: NZ_CP061073
• Coordinates: 1937223..1938095 (+)
• Length: 290 a.a.
• NCBI ID: WP_016264267.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PAD8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1932223..1943095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBG29_RS08985 (IBG29_25065)	pilA/pilAI	1933606..1934070 (-)	465	WP_058169120.1	pilin	Machinery gene
IBG29_RS08990 (IBG29_25060)	pilB	1934301..1936001 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IBG29_RS08995 (IBG29_25055)	pilC	1936005..1937222 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
IBG29_RS09000 (IBG29_25050)	pilD	1937223..1938095 (+)	873	WP_016264267.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
IBG29_RS09005 (IBG29_25045)	coaE	1938092..1938703 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
IBG29_RS09010 (IBG29_25040)	yacG	1938700..1938900 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
IBG29_RS09015 (IBG29_25035)	-	1938937..1939146 (-)	210	WP_003094660.1	hypothetical protein	-
IBG29_RS09020 (IBG29_25030)	-	1939252..1939941 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
IBG29_RS09025 (IBG29_25025)	-	1939938..1940408 (-)	471	WP_003103866.1	hypothetical protein	-
IBG29_RS09030 (IBG29_25020)	-	1940405..1940830 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
IBG29_RS09035 (IBG29_25015)	-	1940963..1941592 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
IBG29_RS09040 (IBG29_25010)	-	1941589..1942038 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
IBG29_RS09045 (IBG29_25005)	-	1942064..1942234 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31903.93 Da
• Isoelectric Point: 7.7068

>NTDB_id=419965 IBG29_RS09000 WP_016264267.1 1937223..1938095(+) (pilD) [Pseudomonas aeruginosa strain PAD8]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGTVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=419965 IBG29_RS09000 WP_016264267.1 1937223..1938095(+) (pilD) [Pseudomonas aeruginosa strain PAD8]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCACGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55	96.552	0.531
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.561	95.862	0.466