Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   IBL27_RS06125 Genome accession   NZ_CP061071
Coordinates   1242009..1244000 (-) Length   663 a.a.
NCBI ID   WP_002291434.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1237009..1249000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS06095 (IBL27_06095) - 1237363..1238499 (-) 1137 WP_002269534.1 aminotransferase -
  IBL27_RS06100 (IBL27_06100) - 1238715..1239530 (-) 816 WP_002265552.1 transporter substrate-binding domain-containing protein -
  IBL27_RS06105 (IBL27_06105) - 1239638..1240102 (-) 465 WP_002261965.1 8-oxo-dGTP diphosphatase -
  IBL27_RS06110 (IBL27_06110) - 1240160..1241050 (-) 891 WP_002291432.1 helix-turn-helix transcriptional regulator -
  IBL27_RS06115 (IBL27_06115) - 1241354..1241680 (-) 327 WP_002285099.1 hypothetical protein -
  IBL27_RS06120 (IBL27_06120) - 1241686..1241841 (-) 156 WP_002265555.1 hypothetical protein -
  IBL27_RS06125 (IBL27_06125) uvrB 1242009..1244000 (-) 1992 WP_002291434.1 excinuclease ABC subunit UvrB Machinery gene
  IBL27_RS06130 (IBL27_06130) - 1244198..1245115 (-) 918 WP_002267620.1 CPBP family intramembrane glutamic endopeptidase -
  IBL27_RS06135 (IBL27_06135) - 1245306..1247492 (+) 2187 WP_002272748.1 ABC transporter substrate-binding protein/permease -
  IBL27_RS06140 (IBL27_06140) - 1247492..1248232 (+) 741 WP_002264169.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76026.88 Da        Isoelectric Point: 4.5849

>NTDB_id=419807 IBL27_RS06125 WP_002291434.1 1242009..1244000(-) (uvrB) [Streptococcus mutans B04Sm5]
MIDRKDNNQFHLVSKYEPSGDQPEAIEALVDNIEGGEKAQILKGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSVVSLRPSQEISRDQLLNDLVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIESLTGRVL
GEVDHLAIFPATHFMTNDEHMEVAIAKIQEEMKEQVRLFEAEGKLIEAQRIRQRTEYDVEMLREMGYTSGVENYSRHMDG
RSEGEPPYTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTDTVIEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINTRADKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSQGHVIMYADT
VTQSMRRAIDETHRRRQIQMAYNEEHGIIPQTIKKDIRDLIAITKANDSEVAEEAVDYNAMTKSERQEAIKKLQKQMQEA
AELLDFELAAQIRDMVLELKAMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=419807 IBL27_RS06125 WP_002291434.1 1242009..1244000(-) (uvrB) [Streptococcus mutans B04Sm5]
ATGATAGATAGGAAAGATAATAACCAGTTTCATCTGGTTTCAAAATATGAGCCGTCTGGTGATCAGCCTGAGGCCATTGA
GGCTTTGGTTGACAATATTGAAGGTGGTGAGAAAGCGCAAATTCTCAAAGGGGCGACTGGGACGGGAAAAACCTATACCA
TGAGCCAAGTTATTCAAAAAGTCAATAAACCGACTTTAGTCATCGCTCATAATAAAACTCTAGCTGGTCAGCTTTACGGT
GAATTTAAAGAATTTTTCCCAGATAATGCAGTTGAGTATTTTGTTTCTTACTATGATTATTATCAGCCTGAAGCCTATGT
GCCATCAAGTGATACCTATATTGAAAAGGATAGTTCAGTTAATGATGAGATTGATAAGCTCCGACATTCGGCAACATCTG
CCCTTTTGGAACGCAATGATGTCATTGTCGTAGCATCCGTCTCCTGTATTTATGGTTTAGGGTCACCCAAGGAATATGCA
GATAGCGTGGTTAGTCTGCGGCCCAGTCAGGAGATTTCTCGCGACCAACTGTTAAATGATTTGGTAGATATTCAGTTTGA
GCGCAACGATATTGATTTCCAGCGGGGACGTTTTCGTGTGCGCGGCGATGTGGTAGAAATTTTTCCAGCATCACGTGATG
AACATGCTTTTCGTGTGGAATTTTTCGGTGATGAGATTGATCGTATCAGAGAAATTGAGAGTTTAACAGGTCGTGTTCTT
GGTGAAGTAGATCACTTGGCTATTTTTCCAGCAACTCACTTTATGACTAACGATGAGCACATGGAAGTGGCTATTGCCAA
GATTCAAGAGGAAATGAAAGAGCAAGTCAGGCTTTTTGAAGCAGAAGGGAAATTGATTGAAGCACAGCGTATTCGCCAAA
GAACAGAGTATGATGTGGAAATGCTGCGGGAGATGGGCTATACTAGCGGCGTTGAAAACTATTCACGTCATATGGATGGC
CGCAGTGAAGGCGAGCCGCCTTATACACTTCTTGACTTTTTTCCAGAGGATTTCCTCATCATGATTGATGAAAGCCACAT
GACTATGGGGCAGATTAAAGGTATGTATAATGGTGACCGATCGCGCAAGGAGATGTTGGTCAACTATGGTTTTCGTCTGC
CAAGTGCGCTGGATAATCGACCGCTGCGTCGAGAAGAATTTGAAAGCCATGTCCATCAGATTGTCTATGTTTCAGCAACA
CCAGGTGACTATGAGATGGAGCAGACGGACACGGTTATTGAGCAAATTATCCGTCCGACTGGTCTCTTGGACCCAGAAGT
AGAAGTTCGGCCAACCATGGGACAAATGGATGACTTGCTGGGTGAAATCAATACGCGTGCTGATAAGGGCGAGCGGACCT
TTATTACAACCTTAACCAAGAAAATGGCGGAAGATTTGACTGACTACCTCAAGGAAATGGGGGTCAAGGTCAAGTACATG
CATTCTGACATCAAGACTCTGGAACGTACTGAAATTATTCGCGACCTGCGTTTAGGTGTTTTTGATGTTCTTATCGGTAT
CAATTTGCTGCGCGAAGGTATTGATGTGCCAGAGGTTAGTCTGGTTGCCATTCTTGATGCAGATAAAGAAGGTTTCCTCC
GCAATGAACGTGGTCTTATCCAGACCATTGGACGGGCTGCGCGCAACAGTCAAGGACATGTTATTATGTATGCTGATACT
GTGACGCAGTCCATGCGTCGCGCTATTGATGAGACCCACCGCCGCCGCCAAATCCAAATGGCTTACAATGAAGAGCATGG
TATTATTCCACAAACCATCAAAAAAGATATCCGCGATCTTATCGCGATTACAAAAGCAAATGACTCTGAAGTGGCTGAGG
AGGCTGTGGATTATAATGCAATGACCAAATCTGAACGCCAAGAAGCCATCAAGAAACTGCAAAAACAAATGCAAGAAGCA
GCTGAACTGCTTGATTTTGAACTGGCTGCTCAAATCCGCGATATGGTTTTAGAATTGAAGGCGATGGATTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-661)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB interaction domain (UvrB_inter)

(164-254)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

Ultra-violet resistance protein B (UvrB)

(556-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

89.291

100

0.893
  uvrB Streptococcus pneumoniae D39

89.291

100

0.893
  uvrB Streptococcus pneumoniae TIGR4

89.14

100

0.891