Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   IBL27_RS05635 Genome accession   NZ_CP061071
Coordinates   1129521..1129955 (-) Length   144 a.a.
NCBI ID   WP_002263292.1    Uniprot ID   Q8DUK6
Organism   Streptococcus mutans B04Sm5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124521..1134955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS05615 (IBL27_05615) - 1124677..1125123 (-) 447 WP_024781560.1 hypothetical protein -
  IBL27_RS05620 (IBL27_05620) tpx 1125289..1125774 (-) 486 WP_002263295.1 thiol peroxidase -
  IBL27_RS05625 (IBL27_05625) rcrQ 1125971..1127725 (-) 1755 WP_024784423.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS05630 (IBL27_05630) rcrP 1127715..1129517 (-) 1803 WP_019806057.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS05635 (IBL27_05635) rcrR 1129521..1129955 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  IBL27_RS05640 (IBL27_05640) queC 1130507..1131160 (+) 654 WP_002309517.1 7-cyano-7-deazaguanine synthase QueC -
  IBL27_RS05645 (IBL27_05645) queD 1131160..1131606 (+) 447 WP_002266457.1 6-carboxytetrahydropterin synthase QueD -
  IBL27_RS05650 (IBL27_05650) queE 1131603..1132319 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  IBL27_RS05655 (IBL27_05655) queF 1132332..1132820 (+) 489 WP_002265143.1 preQ(1) synthase -
  IBL27_RS05660 (IBL27_05660) - 1132929..1133312 (+) 384 WP_002270896.1 DUF3021 family protein -
  IBL27_RS05665 (IBL27_05665) gdhA 1133422..1134771 (-) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16720.58 Da        Isoelectric Point: 10.5126

>NTDB_id=419803 IBL27_RS05635 WP_002263292.1 1129521..1129955(-) (rcrR) [Streptococcus mutans B04Sm5]
MKEPFSEFKNLITATERYIQELSKSHGVEHLSGPQGWTVMFLKDNQGKEIFIKDIEKRLDISKSVTSNLIKRMEKNGFIS
VIPSRKDRRYKQIVLTPLGQEKAGKITVFLTDLKKLLLKDISQEDLSVARKVFKQIKQNLEKKE

Nucleotide


Download         Length: 435 bp        

>NTDB_id=419803 IBL27_RS05635 WP_002263292.1 1129521..1129955(-) (rcrR) [Streptococcus mutans B04Sm5]
ATGAAGGAGCCTTTTAGTGAATTTAAAAACCTCATTACAGCAACAGAAAGATATATTCAAGAATTATCCAAAAGCCATGG
TGTTGAACATCTATCCGGACCTCAGGGATGGACAGTTATGTTTTTAAAGGATAATCAAGGAAAGGAAATTTTTATTAAAG
ATATTGAAAAAAGGTTAGATATCTCAAAATCTGTGACCAGTAATCTCATTAAACGAATGGAAAAAAATGGTTTTATTTCT
GTTATTCCTTCCAGAAAAGACAGACGATACAAGCAAATTGTTTTAACGCCATTAGGTCAGGAAAAAGCTGGAAAAATAAC
TGTTTTTTTAACAGATCTTAAAAAGTTGCTTCTAAAAGATATTAGTCAGGAAGACTTATCAGTTGCTCGAAAGGTTTTTA
AACAAATCAAACAAAATTTAGAAAAGAAGGAGTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

100

100

1