Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPPN_RS02130 Genome accession   NC_015875
Coordinates   370337..372316 (+) Length   659 a.a.
NCBI ID   WP_000857591.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 369173..370220 370337..372316 flank 117


Gene organization within MGE regions


Location: 369173..372316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS11660 - 369173..370220 (+) 1048 WP_148255714.1 IS630 family transposase -
  SPPN_RS02130 (SPPN_02180) amiA3 370337..372316 (+) 1980 WP_000857591.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72740.44 Da        Isoelectric Point: 4.7563

>NTDB_id=41979 SPPN_RS02130 WP_000857591.1 370337..372316(+) (amiA3) [Streptococcus pseudopneumoniae IS7493]
MKTRKVLALAGVTLLAAGVLAACSGGSGAQGEKTFAFTYETHPDNLNYLTTGKAATSEITSNVIDGLLENDKYGNLVPSL
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKAEALYLVQDSIKGLDAYAKGEITDFTQVGI
KALDDQTIQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSLLYNGPYLLKSIVTKSSVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKSMKDNIVYTQQDSTTYLVGTNIDRQSYKYTSKT
SEEQKTSTKKALLNKDFRQAIAFGFDRTAYAAQLNGETGASKILRNLFVPPTFVQADGKNFGDIVKEKLVTYGDEWKDVN
LADSQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGTDNVVIDIQQLQKDELL
NVTLFAENAAGEDWDLSDNVGWGPDFADPSTYLDIIKPSVGESTKTYLGFDSGEDNVAAKKVGLYDYEKLVTEAGDETTD
VAKRYDKYAAAQAWLTDSALIIPTTSKTGRPILSKMVPFTIPFALSGNKGTSDPVLYKYLELQDKAVTADEYQKAQEKWM
KEKAESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=41979 SPPN_RS02130 WP_000857591.1 370337..372316(+) (amiA3) [Streptococcus pseudopneumoniae IS7493]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTAACCTTATTAGCAGCTGGTGTTTTAGCTGCTTGTTCTGGGGGTTC
AGGTGCTCAAGGTGAAAAAACCTTTGCATTTACTTACGAGACACATCCAGATAATCTCAACTATTTGACAACTGGTAAGG
CAGCAACTTCTGAGATTACTAGTAATGTGATTGATGGATTGCTTGAAAATGATAAATACGGGAACCTTGTTCCTTCATTG
GCAGAAGACTGGTCAGTTTCTAAGGATGGCTTGACTTATACTTATAAGATTCGTCAGGATGCCAAGTGGTATACATCTGA
GGGAGAAGAGTACGCTCCTGTTAAGGCTCAGGACTTTGTAACAGGACTTAAATATGCAACAGATAAGAAAGCAGAAGCCC
TTTACTTGGTACAGGATTCAATCAAAGGTCTGGATGCCTATGCCAAAGGTGAAATCACAGACTTCACTCAAGTCGGGATT
AAAGCCCTTGACGACCAAACAATCCAATACACCTTGAACAAACCTGAAAGTTTTTGGAATTCCAAAACAACAATGGGTGT
GCTTGCGCCAGTTAATGAAGAGTTTTTGAATTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGTAGTCTCTTGT
ATAACGGTCCTTATTTGTTGAAATCCATTGTGACCAAATCTTCCGTTGAATTTGCGAAAAATCCGAACTATTGGGATAAG
GACAATGTGCATATTGACAAAGTTAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCAGCAGAAAACTTTAAAGA
TGGTAGCCTTACAGCAGCTCGTCTTTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAAGACAATATCG
TCTATACTCAACAAGACTCTACGACTTATCTAGTAGGGACAAATATTGACCGTCAATCTTATAAATACACATCTAAGACT
AGCGAAGAACAAAAGACATCTACTAAAAAGGCTCTCTTAAATAAGGATTTCCGTCAGGCTATTGCCTTTGGATTTGACCG
TACAGCCTATGCCGCTCAGTTGAATGGAGAAACTGGAGCAAGCAAAATCTTGCGCAATCTCTTTGTGCCACCAACATTTG
TTCAAGCAGATGGGAAGAACTTTGGCGATATAGTCAAAGAAAAATTAGTGACTTATGGGGATGAATGGAAGGATGTCAAT
CTTGCAGATTCACAAGATGGTCTTTACAATCCAGAAAAAGCTAAAGCAGAATTTGCCAAAGCCAAATCAGCCCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCTGTTGACCAGACAGCAACTACAAAAGTTCAACGTGTCCAATCTA
TGAAACAATCCTTGGAAGCAACTTTAGGAACTGATAATGTCGTTATTGATATCCAACAATTGCAAAAAGATGAATTGCTT
AATGTAACTCTATTTGCCGAAAATGCTGCTGGCGAAGACTGGGATTTATCAGATAATGTCGGTTGGGGTCCAGACTTTGC
CGATCCATCAACCTACCTTGATATTATCAAACCTTCTGTAGGAGAAAGTACTAAAACATATTTAGGATTTGACTCAGGGG
AAGATAATGTAGCTGCTAAAAAAGTAGGTCTATATGACTACGAAAAATTGGTTACTGAAGCTGGTGATGAGACTACAGAT
GTTGCTAAACGATATGATAAATACGCAGCAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATCCCAACAACTTCTAA
AACTGGTCGTCCAATCTTGTCTAAGATGGTACCATTTACAATACCATTTGCATTGTCAGGAAATAAAGGTACAAGTGACC
CAGTCTTGTATAAATACCTTGAACTTCAAGACAAGGCAGTTACTGCAGATGAATATCAAAAAGCTCAAGAAAAATGGATG
AAAGAAAAAGCAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.636

100

0.587
  amiA Streptococcus salivarius strain HSISS4

58.485

100

0.586
  amiA3 Streptococcus thermophilus LMG 18311

58.182

100

0.583

Multiple sequence alignment