NTDB

Overview

Name	scnR	Type	Regulator
Locus tag	IBL27_RS01720	Genome accession	NZ_CP061071
Coordinates	343119..343817 (+)	Length	232 a.a.
NCBI ID	WP_002263491.1	Uniprot ID	Q8DSH0
Organism	Streptococcus mutans B04Sm5
Function	regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 338119..348817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBL27_RS01685 (IBL27_01685)	gatC	338309..338611 (+)	303	WP_002288243.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	-
IBL27_RS01690 (IBL27_01690)	gatA	338611..340077 (+)	1467	WP_002274738.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-
IBL27_RS01695 (IBL27_01695)	gatB	340077..341516 (+)	1440	WP_002282413.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	-
IBL27_RS10060	-	341655..342068 (+)	414	Protein_313	transposase	-
IBL27_RS09855	-	342061..343014 (+)	954	Protein_314	reverse transcriptase domain-containing protein	-
IBL27_RS01720 (IBL27_01720)	scnR	343119..343817 (+)	699	WP_002263491.1	response regulator transcription factor	Regulator
IBL27_RS01725 (IBL27_01725)	-	343835..345214 (+)	1380	WP_002266300.1	sensor histidine kinase	-
IBL27_RS10065	-	345571..345692 (-)	122	Protein_317	helix-turn-helix domain-containing protein	-
IBL27_RS01730 (IBL27_01730)	-	345800..347049 (-)	1250	Protein_318	ISL3-like element ISSmu2 family transposase	-
IBL27_RS01735 (IBL27_01735)	-	347324..347482 (+)	159	WP_002268660.1	lacticin 481 family lantibiotic	-
IBL27_RS01740 (IBL27_01740)	-	347509..347661 (+)	153	WP_002269377.1	lacticin 481 family lantibiotic	-
IBL27_RS01745 (IBL27_01745)	-	347701..347856 (+)	156	WP_002296231.1	lacticin 481 family lantibiotic	-
IBL27_RS01750 (IBL27_01750)	-	348050..348211 (+)	162	WP_002268661.1	type A2 lanthipeptide	-
IBL27_RS09860	-	348229..348483 (+)	255	WP_238559791.1	hypothetical protein	-

Sequence

Protein

Download Length: 232 a.a. Molecular weight: 26106.25 Da Isoelectric Point: 6.3461

                                >NTDB_id=419769 IBL27_RS01720 WP_002263491.1 343119..343817(+) (scnR) [Streptococcus mutans B04Sm5]

MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS

DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT

PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide

Download Length: 699 bp

                                >NTDB_id=419769 IBL27_RS01720 WP_002263491.1 343119..343817(+) (scnR) [Streptococcus mutans B04Sm5]

GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA

GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA

AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA

GATGTCCCTATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT

TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG

AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC

CCAACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCACATCGTCTCCACAGAAGCGATTTGCGATGCGGT

GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT

CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
scnR	Streptococcus mutans UA159	42.411	96.552	0.409
vicR	Streptococcus mutans UA159	37.826	99.138	0.375
micA	Streptococcus pneumoniae Cp1015	36.842	98.276	0.362

Detailed information NTG0419769