Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GT972_RS07290 Genome accession   NZ_CP048030
Coordinates   1503159..1504496 (+) Length   445 a.a.
NCBI ID   WP_238388376.1    Uniprot ID   -
Organism   Sinimarinibacterium sp. NLF-5-8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498159..1509496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT972_RS07270 (GT972_07275) sucD 1499098..1499970 (-) 873 WP_162078000.1 succinate--CoA ligase subunit alpha -
  GT972_RS07275 (GT972_07280) sucC 1500018..1501181 (-) 1164 WP_162078001.1 ADP-forming succinate--CoA ligase subunit beta -
  GT972_RS07280 (GT972_07285) - 1501318..1501533 (+) 216 WP_162078002.1 hypothetical protein -
  GT972_RS07285 (GT972_07290) - 1501538..1503157 (+) 1620 WP_162078003.1 PAS domain-containing sensor histidine kinase -
  GT972_RS07290 (GT972_07295) pilR 1503159..1504496 (+) 1338 WP_238388376.1 sigma-54 dependent transcriptional regulator Regulator
  GT972_RS07295 (GT972_07300) petA 1504669..1505262 (+) 594 WP_162078005.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  GT972_RS07300 (GT972_07305) - 1505262..1506512 (+) 1251 WP_162078006.1 cytochrome bc complex cytochrome b subunit -
  GT972_RS07305 (GT972_07310) - 1506499..1507257 (+) 759 WP_238388377.1 cytochrome c1 -
  GT972_RS07310 (GT972_07315) - 1507488..1507964 (+) 477 WP_162078007.1 ClpXP protease specificity-enhancing factor -
  GT972_RS07315 (GT972_07320) - 1507957..1508931 (-) 975 Protein_1428 tellurite resistance/C4-dicarboxylate transporter family protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48696.56 Da        Isoelectric Point: 6.0624

>NTDB_id=419603 GT972_RS07290 WP_238388376.1 1503159..1504496(+) (pilR) [Sinimarinibacterium sp. NLF-5-8]
MSTANVLVVDDEPDIRELVEIVLGRMGLHISSAANLDEARQRLREQTFDLCITDMRLPDGTGIELVHEIQQRCPYTPVAV
ITAYGNAEVAVESLKAGAFDFVAKPVDVPALRKLVDSALKLREHNTDNPENASPPSSDASTELLGTHHSIQALRNLIERL
ARSQAPVHISGESGTGKELVARQIHLRGPRARAPFVAINCGAVPNELMESEFFGHIKGSFTGAHRDKAGLFQAAEGGTLF
LDEVAELPLHMQVKLLRALQERRVRPVGASQEIAVNVRIISATHENLAQRVSSGQFRQDLFYRLDVIAVHTPALRERPED
IPLLTEQILHRIAARTGYADVPAVDAATLQALQAYSFPGNVRELENILERSLTLCDGITIYPADLQLRSDFAIAPPPPLT
LTDPAQTPAEVEQIEARAAQKLGISTRALRERLRKLGIQIPASPP

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=419603 GT972_RS07290 WP_238388376.1 1503159..1504496(+) (pilR) [Sinimarinibacterium sp. NLF-5-8]
GTGAGCACCGCCAACGTGCTGGTCGTTGACGACGAGCCGGATATCCGCGAGCTGGTCGAAATCGTGCTGGGACGAATGGG
GCTGCACATCAGCAGCGCCGCCAATCTCGACGAAGCCCGCCAGCGCCTGCGTGAGCAAACCTTCGATCTGTGCATCACCG
ACATGCGCCTGCCTGACGGCACCGGCATCGAACTGGTTCATGAAATCCAGCAGCGCTGCCCCTACACGCCGGTTGCCGTG
ATCACTGCCTATGGCAACGCCGAGGTGGCAGTGGAAAGCCTCAAGGCCGGCGCATTCGACTTCGTCGCCAAGCCGGTCGA
TGTCCCGGCGCTGCGCAAACTGGTCGACAGCGCCCTCAAGCTGCGCGAGCACAACACGGACAATCCAGAAAACGCGTCGC
CCCCGTCTTCCGACGCCAGCACCGAGCTGCTCGGCACCCATCACAGCATCCAGGCACTGCGCAACCTGATCGAGCGCCTT
GCACGCAGTCAGGCACCCGTCCACATCAGCGGTGAATCCGGCACCGGCAAGGAGCTGGTGGCGCGGCAGATTCATCTGCG
CGGCCCGCGCGCGCGCGCGCCATTTGTCGCCATCAACTGCGGGGCGGTGCCCAACGAGTTGATGGAAAGTGAATTTTTTG
GCCACATCAAAGGCAGTTTCACCGGCGCGCACCGCGACAAGGCCGGCCTGTTCCAGGCCGCCGAAGGCGGCACCCTGTTT
CTGGATGAAGTCGCGGAGCTGCCCCTGCACATGCAAGTCAAACTGCTGCGCGCGCTGCAGGAGCGCCGCGTCCGACCGGT
GGGCGCATCACAGGAAATCGCCGTCAACGTGCGGATCATTTCTGCCACCCATGAAAATCTTGCCCAACGCGTCAGCAGCG
GCCAGTTCCGCCAGGACCTGTTCTATCGGCTGGACGTGATCGCAGTACACACGCCCGCGCTGCGCGAACGCCCCGAAGAC
ATCCCGCTGTTGACCGAACAGATCCTGCACCGCATCGCCGCGCGCACCGGCTACGCCGATGTCCCCGCCGTCGATGCCGC
CACCCTGCAAGCCCTGCAAGCCTATTCATTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAGCGCAGCCTGACGC
TGTGCGACGGCATCACCATTTACCCGGCAGACCTGCAACTGCGCAGCGATTTTGCGATTGCCCCGCCGCCACCGCTCACC
TTAACCGACCCCGCCCAGACCCCCGCCGAGGTCGAGCAGATCGAAGCGCGCGCTGCGCAAAAGCTCGGGATTTCCACCCG
TGCGCTGCGCGAACGGCTCCGGAAACTGGGGATCCAGATCCCGGCCTCGCCCCCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.703

100

0.58
  pilR Acinetobacter baumannii strain A118

46.121

100

0.481

Multiple sequence alignment