Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   IBC03_RS07220 Genome accession   NZ_CP061025
Coordinates   1400090..1402081 (-) Length   663 a.a.
NCBI ID   WP_065972466.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395090..1407081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS07195 (IBC03_07215) - 1395431..1396225 (-) 795 WP_011681450.1 transporter substrate-binding domain-containing protein -
  IBC03_RS07200 (IBC03_07220) - 1396287..1397396 (-) 1110 WP_014608576.1 aminotransferase -
  IBC03_RS07205 (IBC03_07225) - 1397743..1398540 (-) 798 WP_014621828.1 transporter substrate-binding domain-containing protein -
  IBC03_RS07210 (IBC03_07230) - 1398537..1399367 (-) 831 WP_014621829.1 transporter substrate-binding domain-containing protein -
  IBC03_RS07215 (IBC03_07235) - 1399581..1400045 (-) 465 WP_011681454.1 8-oxo-dGTP diphosphatase -
  IBC03_RS07220 (IBC03_07240) uvrB 1400090..1402081 (-) 1992 WP_065972466.1 excinuclease ABC subunit UvrB Machinery gene
  IBC03_RS07225 (IBC03_07245) - 1402228..1402695 (-) 468 WP_065972467.1 hypothetical protein -
  IBC03_RS10585 (IBC03_07250) - 1402768..1403706 (-) 939 Protein_1382 type II CAAX endopeptidase family protein -
  IBC03_RS07235 (IBC03_07255) - 1403905..1406115 (+) 2211 WP_014621834.1 ABC transporter substrate-binding protein/permease -
  IBC03_RS07240 (IBC03_07260) - 1406115..1406855 (+) 741 WP_014608584.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 76101.19 Da        Isoelectric Point: 4.5966

>NTDB_id=419595 IBC03_RS07220 WP_065972466.1 1400090..1402081(-) (uvrB) [Streptococcus thermophilus strain 13496]
MIDRKEDNQFHLVSKYEPSGDQPQAIETLVDNIKGGEKAQILKGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYA
DSAVSLRPGQEISRDKLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDENAFRVEFFGDEIDRICEIESLTGRNL
GEVEHLVLFPATHFMTNEEHMEEAIKNIMEEMEVQVNQFEAEGKLIEAQRIRQRTEYDVEMLREMGYTNGIENYSRHMDG
RKEGEPPFTLLDFFPEDFLIMIDESHMTMGQIKGMYNGDQARKKMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARTEKGERVFVTTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSDGHVIMYADK
ITESMQKAMDETARRREIQMAYNKEHGITPQTIKKEIRDLISITKTNEAEVAEDTVNYCAMNKKERQEAIKKLQKQMHEA
AELLDFELAAQIRDMVLELKSMD

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=419595 IBC03_RS07220 WP_065972466.1 1400090..1402081(-) (uvrB) [Streptococcus thermophilus strain 13496]
ATGATAGATAGAAAAGAAGACAACCAATTTCATTTGGTTTCTAAATACGAACCCTCAGGAGATCAGCCCCAGGCTATCGA
AACCTTGGTTGATAATATCAAAGGTGGGGAGAAGGCTCAAATTTTAAAGGGTGCGACAGGGACAGGTAAGACCTATACCA
TGAGTCAAGTCATCCAACGTGTTAATAAGCCAACTCTGGTTATCGCCCACAATAAGACCTTGGCAGGCCAGCTCTATGGT
GAGTTCAAGGAGTTTTTCCCAGACAATGCTGTAGAGTATTTTGTTTCCTATTATGATTATTACCAGCCAGAGGCTTATGT
GCCTTCATCAGATACCTATATTGAAAAAGATAGCTCTGTTAATGATGAAATTGATAAACTCCGTCACTCAGCGACATCAG
CCCTATTGGAACGCAATGATGTAATTGTTGTGGCTTCCGTGTCTTGTATTTACGGTTTGGGTTCGCCAAAAGAATATGCG
GATTCAGCTGTTAGCCTGCGTCCTGGTCAAGAAATTTCTCGGGACAAGTTGCTCAATGACTTGGTTGATATCCAGTTTGA
GCGTAACGATATTGATTTTCAACGCGGAAAATTCCGTGTACGTGGCGATGTGGTTGAAATTTTCCCTGCCAGCCGTGATG
AAAATGCTTTTCGAGTGGAATTTTTCGGTGATGAGATTGACCGTATCTGTGAAATTGAAAGTTTGACAGGACGTAATCTC
GGTGAAGTTGAGCACCTTGTTCTTTTTCCGGCTACTCACTTTATGACCAATGAAGAGCATATGGAAGAAGCTATCAAGAA
TATTATGGAAGAGATGGAGGTTCAGGTTAATCAATTTGAAGCCGAGGGTAAACTCATCGAGGCTCAACGTATTCGTCAAC
GGACAGAATACGATGTCGAAATGCTTCGTGAGATGGGTTACACCAATGGTATCGAAAACTACTCACGTCACATGGATGGT
CGTAAAGAAGGTGAGCCACCGTTTACTCTACTTGATTTCTTCCCAGAAGATTTCCTCATCATGATTGATGAAAGTCACAT
GACCATGGGACAGATTAAAGGAATGTATAACGGAGACCAAGCCCGTAAGAAGATGCTTGTCGATTACGGCTTCCGTTTAC
CATCGGCTCTTGATAACCGTCCCCTTCGTCGTGAAGAATTCGAAAGTCATGTGCATCAGATTGTCTATGTGTCAGCGACA
CCAGGCGACTATGAGATGGAGCAGACTGAGACTGTCGTTGAGCAAATCATCCGTCCGACAGGACTTCTTGATCCAGAAGT
CGAAGTTCGTCCAACTATGGGTCAAATGGATGACCTCCTTGGTGAAATCAATGCCCGTACTGAAAAAGGAGAGCGTGTCT
TTGTAACAACTTTGACTAAGAAGATGGCTGAAGACTTGACCGATTACCTCAAGGAAATGGGAGTCAAGGTCAAATACATG
CACTCTGATATTAAGACTTTGGAGCGTACTGAGATTATCCGTGACTTGCGTTTGGGTGTCTTTGATGTTCTTATTGGGAT
TAACCTTCTTCGTGAGGGTATTGACGTTCCTGAAGTTAGTCTGGTTGCTATTTTGGATGCTGATAAGGAAGGTTTCCTTC
GTAATGAACGTGGGCTTATCCAAACGATTGGACGTGCTGCCCGAAATAGTGATGGGCACGTTATCATGTATGCGGATAAG
ATTACGGAGTCTATGCAGAAAGCTATGGATGAAACTGCTCGTCGTCGTGAAATCCAAATGGCCTATAATAAGGAGCACGG
TATTACTCCGCAAACGATTAAGAAAGAAATTCGTGACCTTATTTCGATTACCAAGACCAATGAAGCAGAAGTGGCAGAGG
ATACTGTGAACTACTGTGCCATGAACAAGAAAGAACGCCAAGAAGCCATCAAGAAACTTCAAAAGCAAATGCACGAAGCG
GCAGAGCTGCTTGATTTTGAATTGGCAGCCCAAATTCGTGATATGGTTCTAGAGCTGAAGAGTATGGATTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(628-660)

Type III restriction enzyme, res subunit (ResIII)

(17-143)

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

85.37

100

0.854
  uvrB Streptococcus pneumoniae D39

85.37

100

0.854
  uvrB Streptococcus pneumoniae TIGR4

85.219

100

0.852

Multiple sequence alignment