Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GVU25_RS04825 Genome accession   NZ_CP048014
Coordinates   1010845..1011549 (-) Length   234 a.a.
NCBI ID   WP_167845925.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 205     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005845..1016549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVU25_RS04805 (GVU25_04800) - 1006616..1007935 (+) 1320 WP_004971574.1 adenylosuccinate synthase -
  GVU25_RS04810 (GVU25_04805) - 1008174..1008482 (+) 309 WP_004971573.1 hypothetical protein -
  GVU25_RS04815 (GVU25_04810) - 1008639..1009421 (+) 783 WP_004971571.1 M48 family metallopeptidase -
  GVU25_RS04820 (GVU25_04815) - 1009591..1010640 (-) 1050 WP_167845924.1 NADP(H)-dependent aldo-keto reductase -
  GVU25_RS04825 (GVU25_04820) crp 1010845..1011549 (-) 705 WP_167845925.1 cAMP-activated global transcriptional regulator CRP Regulator
  GVU25_RS04830 (GVU25_04825) - 1011698..1012120 (+) 423 WP_004971563.1 OsmC family protein -
  GVU25_RS04835 (GVU25_04830) clpB 1012433..1015012 (+) 2580 WP_004971561.1 ATP-dependent chaperone ClpB -
  GVU25_RS04840 (GVU25_04835) - 1015241..1016524 (+) 1284 WP_167845926.1 DUF945 family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26318.89 Da        Isoelectric Point: 4.6470

>NTDB_id=419434 GVU25_RS04825 WP_167845925.1 1010845..1011549(-) (crp) [Acinetobacter towneri strain 205]
MTSNFSQLSTDALSPGQLPDSVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFESNPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEATDGDFDDE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=419434 GVU25_RS04825 WP_167845925.1 1010845..1011549(-) (crp) [Acinetobacter towneri strain 205]
ATGACTTCAAACTTTTCACAGCTGAGCACTGATGCATTGTCCCCTGGACAACTGCCTGACTCAGTCAAAGCATTATTAAA
ACGTGCATACATCAACCGTTATCCAAAACGGACAACTATTGTTGATGCAGGGACTGAATCTAAATCGTTATATTTGATTT
TAAAAGGTTCAGTATCAATTATTCTTCGCGAAGATGATGATCGCGAAATTGTTGTGGCATATTTGAATCCAGGCGACTTT
TTTGGGGAAATGGGTCTGTTTGAATCGAATCCACAACGTACTGCAGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTACTTATGAAAACTTCCACGAACTCAGCAAACAATATCCTGACTTAAGCTATGCCGTTTTTGCACAGCTGGTACGTC
GTTTAAAAAATACTACACGTAAGGTAACTGACCTTGCCTTTATAGATGTGTCTGGTCGTATTGCACGTTGTTTGATTGAC
CTTTCTGCACAGCCAGAAGCTATGATTTTACCAAATGGTCGTCAGATTCGTATTACACGTCAGGAAATTGGCCGTATTGT
TGGTTGTTCACGTGAAATGGTTGGTCGTGTACTGAAAACGCTTGAAGAGCAAGGCATGATTGAAACTGATGGTAAAGCCA
TTCTGATTTTTGATGCTTCTTTGGAGCAAAATGAAGCCACTGATGGCGACTTTGATGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.308

100

0.923
  crp Vibrio cholerae strain A1552

47.317

87.607

0.415
  crp Haemophilus influenzae Rd KW20

47.692

83.333

0.397

Multiple sequence alignment